Difference between revisions of "Airlie J. McCoy"
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+ | <div style="margin-left: 25px; float: right;">__TOC__</div> | ||
==Publications== | ==Publications== | ||
+ | ===2010=== | ||
;A large-scale conformational change couples membrane recruitment to cargo binding in the AP2 clathrin adaptor complex. | ;A large-scale conformational change couples membrane recruitment to cargo binding in the AP2 clathrin adaptor complex. | ||
:Jackson LP, Kelly BT, <span style="color:darkmagenta">McCoy AJ</span>, Gaffry T, James LC, Collins BM, Höning S, Evans PR, Owen DJ. | :Jackson LP, Kelly BT, <span style="color:darkmagenta">McCoy AJ</span>, Gaffry T, James LC, Collins BM, Höning S, Evans PR, Owen DJ. | ||
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:[http://www.phaser.cimr.cam.ac.uk/images/b/b9/Dz5186.pdf '''download pdf'''] | :[http://www.phaser.cimr.cam.ac.uk/images/b/b9/Dz5186.pdf '''download pdf'''] | ||
+ | ===2009=== | ||
;Decision-making in structure solution using Bayesian estimates of map quality<nowiki>:</nowiki> the PHENIX AutoSol wizard | ;Decision-making in structure solution using Bayesian estimates of map quality<nowiki>:</nowiki> the PHENIX AutoSol wizard | ||
:Terwilliger TC, Adams PD, Read RJ, <span style="color:darkmagenta">McCoy AJ</span> , Moriarty NW, Grosse-Kunstleve RW, Afonine PV, Zwart PH, Hung LW. | :Terwilliger TC, Adams PD, Read RJ, <span style="color:darkmagenta">McCoy AJ</span> , Moriarty NW, Grosse-Kunstleve RW, Afonine PV, Zwart PH, Hung LW. | ||
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:[http://www.phaser.cimr.cam.ac.uk/images/b/b2/He5368.pdf '''download pdf'''] | :[http://www.phaser.cimr.cam.ac.uk/images/b/b2/He5368.pdf '''download pdf'''] | ||
+ | ===2008=== | ||
;A structural explanation for the binding of endocytic dileucine motifs by the AP2 complex | ;A structural explanation for the binding of endocytic dileucine motifs by the AP2 complex | ||
:Kelly BT, <span style="color:darkmagenta">McCoy AJ</span>, Späte K, Miller SE, Evans PR, Höning S, Owen DJ. | :Kelly BT, <span style="color:darkmagenta">McCoy AJ</span>, Späte K, Miller SE, Evans PR, Höning S, Owen DJ. | ||
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:[http://www.phaser.cimr.cam.ac.uk/images/8/8d/Zwart_etal_2008_preview.pdf '''preview pdf'''] [http://dx.doi.org/10.1007/978-1-60327-058-8 '''doi'''] Digital Object Identifier | :[http://www.phaser.cimr.cam.ac.uk/images/8/8d/Zwart_etal_2008_preview.pdf '''preview pdf'''] [http://dx.doi.org/10.1007/978-1-60327-058-8 '''doi'''] Digital Object Identifier | ||
+ | ===2007=== | ||
;A SNARE-adaptor interaction is a new mode of cargo recognition in clathrin-coated vesicles | ;A SNARE-adaptor interaction is a new mode of cargo recognition in clathrin-coated vesicles | ||
:Miller SE, Collins BM, <span style="color:darkmagenta">McCoy AJ</span>, Robinson MS, Owen DJ. | :Miller SE, Collins BM, <span style="color:darkmagenta">McCoy AJ</span>, Robinson MS, Owen DJ. | ||
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:[http://www.nature.com/nature/journal/v450/n7167/abs/nature06249.html '''Nature'''] (subscription required) | :[http://www.nature.com/nature/journal/v450/n7167/abs/nature06249.html '''Nature'''] (subscription required) | ||
− | ; | + | ;Solving structures of protein complexes by molecular replacement with Phaser |
− | : | + | :<span style="color:darkmagenta">McCoy AJ</span> |
− | : | + | :Acta Crystallogr D Biol Crystallogr. 2007 Jan;63(Pt 1):32-41. Epub 2006 Dec 13. |
− | :[http:// | + | :[http://www.phaser.cimr.cam.ac.uk/images/4/40/Ba5095.pdf '''download pdf'''] |
;Phaser crystallographic software | ;Phaser crystallographic software | ||
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:[http://www.phaser.cimr.cam.ac.uk/images/b/b2/He5368.pdf '''download pdf'''] | :[http://www.phaser.cimr.cam.ac.uk/images/b/b2/He5368.pdf '''download pdf'''] | ||
− | ; | + | ;β-Edge interactions in a pentadecameric human antibody Vκ domain. |
− | :<span style="color:darkmagenta">McCoy | + | :James LC, Jones PC, <span style="color:darkmagenta">McCoy A</span>, Tennent GA, Pepys MB, Famm K, Winter G. |
− | : | + | :J Mol Biol. 2007 Mar 30;367(3):603-8. Epub 2006 Nov 3. |
− | :[http:// | + | :[http://dx.doi.org/10.1016/j.jmb.2006.10.093 '''doi'''] Digital Object Identifier |
+ | |||
+ | ===2006=== | ||
;Crystal structure of rab11 in complex with rab11 family interacting protein 2 | ;Crystal structure of rab11 in complex with rab11 family interacting protein 2 | ||
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:[http://www.structure.org/content/article/abstract?uid=PIIS0969212606002930 '''Structure'''] (subscription required) | :[http://www.structure.org/content/article/abstract?uid=PIIS0969212606002930 '''Structure'''] (subscription required) | ||
+ | ===2005=== | ||
;Likelihood-enhanced fast translation functions | ;Likelihood-enhanced fast translation functions | ||
:<span style="color:darkmagenta">McCoy AJ</span>, Grosse-Kunstleve RW, Storoni LC, Read RJ. | :<span style="color:darkmagenta">McCoy AJ</span>, Grosse-Kunstleve RW, Storoni LC, Read RJ. | ||
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:[http://www.phaser.cimr.cam.ac.uk/images/6/63/Gx5042.pdf '''download pdf'''] | :[http://www.phaser.cimr.cam.ac.uk/images/6/63/Gx5042.pdf '''download pdf'''] | ||
+ | ===2004=== | ||
;Liking Likelihood | ;Liking Likelihood | ||
:<span style="color:darkmagenta">McCoy AJ</span> | :<span style="color:darkmagenta">McCoy AJ</span> | ||
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:[http://www.phaser.cimr.cam.ac.uk/images/3/3a/Ad5007.pdf '''download pdf'''] | :[http://www.phaser.cimr.cam.ac.uk/images/3/3a/Ad5007.pdf '''download pdf'''] | ||
+ | ===2003=== | ||
;Recent developments in the PHENIX software for automated crystallographic structure determination | ;Recent developments in the PHENIX software for automated crystallographic structure determination | ||
:Adams PD, Gopal K, Grosse-Kunstleve RW, Hung LW, Ioerger TR, <span style="color:darkmagenta">McCoy AJ</span>, Moriarty NW, Pai RK, Read RJ, Romo TD, Sacchettini JC, Sauter NK, Storoni LC, Terwilliger TC. | :Adams PD, Gopal K, Grosse-Kunstleve RW, Hung LW, Ioerger TR, <span style="color:darkmagenta">McCoy AJ</span>, Moriarty NW, Pai RK, Read RJ, Romo TD, Sacchettini JC, Sauter NK, Storoni LC, Terwilliger TC. | ||
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:[http://dx.doi.org/10.1016/S0022-2836(02)01382-7 '''doi'''] Digital Object Identifier | :[http://dx.doi.org/10.1016/S0022-2836(02)01382-7 '''doi'''] Digital Object Identifier | ||
+ | ===2002=== | ||
;New applications of maximum likelihood and Bayesian statistics in macromolecular crystallography | ;New applications of maximum likelihood and Bayesian statistics in macromolecular crystallography | ||
:<span style="color:darkmagenta">McCoy AJ</span> | :<span style="color:darkmagenta">McCoy AJ</span> | ||
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:[http://www.structure.org/content/article/abstract?uid=PIIS0092867402007353 '''Cell'''] (subscription required) | :[http://www.structure.org/content/article/abstract?uid=PIIS0092867402007353 '''Cell'''] (subscription required) | ||
+ | ===2001=== | ||
+ | :No publications | ||
+ | |||
+ | ===2000=== | ||
;ScFv multimers of the anti-neuraminidase antibody NC10<nowiki>:</nowiki> shortening of the linker in single-chain Fv fragment assembled in V(L) to V(H) orientation drives the formation of dimers, trimers, tetramers and higher molecular mass multimers | ;ScFv multimers of the anti-neuraminidase antibody NC10<nowiki>:</nowiki> shortening of the linker in single-chain Fv fragment assembled in V(L) to V(H) orientation drives the formation of dimers, trimers, tetramers and higher molecular mass multimers | ||
:Dolezal O, Pearce LA, Lawrence LJ, <span style="color:darkmagenta">McCoy AJ</span>, Hudson PJ, Kortt AA. | :Dolezal O, Pearce LA, Lawrence LJ, <span style="color:darkmagenta">McCoy AJ</span>, Hudson PJ, Kortt AA. | ||
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:[http://www.phaser.cimr.cam.ac.uk/images/4/45/JBC-2000-Huntington-15377-83.pdf '''download pdf'''] | :[http://www.phaser.cimr.cam.ac.uk/images/4/45/JBC-2000-Huntington-15377-83.pdf '''download pdf'''] | ||
+ | ===1999=== | ||
;Structural basis for dimerization of the Dictyostelium gelation factor (ABP120) rod | ;Structural basis for dimerization of the Dictyostelium gelation factor (ABP120) rod | ||
:<span style="color:darkmagenta">McCoy AJ</span>, Fucini P, Noegel AA, Stewart M. | :<span style="color:darkmagenta">McCoy AJ</span>, Fucini P, Noegel AA, Stewart M. | ||
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:[http://dx.doi.org/10.1006/jmbi.1999.2775 '''doi'''] Digital Object Identifier | :[http://dx.doi.org/10.1006/jmbi.1999.2775 '''doi'''] Digital Object Identifier | ||
+ | ===1998=== | ||
;The structure of the Q69L mutant of GDP-Ran shows a major conformational change in the switch II loop that accounts for its failure to bind nuclear transport factor 2 (NTF2) | ;The structure of the Q69L mutant of GDP-Ran shows a major conformational change in the switch II loop that accounts for its failure to bind nuclear transport factor 2 (NTF2) | ||
:Stewart M, Kent HM, <span style="color:darkmagenta">McCoy AJ</span>. | :Stewart M, Kent HM, <span style="color:darkmagenta">McCoy AJ</span>. | ||
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:[http://www.nature.com/nsmb/journal/v5/n3/abs/nsb0398-184.html '''Nature Structural Biology'''] (subscription required) | :[http://www.nature.com/nsmb/journal/v5/n3/abs/nsb0398-184.html '''Nature Structural Biology'''] (subscription required) | ||
+ | ===1997=== | ||
;Crystallization and preliminary X-Ray diffraction characterization of a dimerizing fragment of the rod domain of the Dictyostelium gelation factor (ABP-120) | ;Crystallization and preliminary X-Ray diffraction characterization of a dimerizing fragment of the rod domain of the Dictyostelium gelation factor (ABP-120) | ||
:Fucini P, <span style="color:darkmagenta">McCoy AJ</span>, Gomez-Ortiz M, Schleicher M, Noegel AA, Stewart M. | :Fucini P, <span style="color:darkmagenta">McCoy AJ</span>, Gomez-Ortiz M, Schleicher M, Noegel AA, Stewart M. |
Revision as of 11:46, 11 August 2010
Publications
2010
- A large-scale conformational change couples membrane recruitment to cargo binding in the AP2 clathrin adaptor complex.
- Jackson LP, Kelly BT, McCoy AJ, Gaffry T, James LC, Collins BM, Höning S, Evans PR, Owen DJ.
- Cell. 2010 Jun 25;141(7):1220-9.
- Cell (subscription required)
- Experimental phasing: best practice and pitfalls.
- McCoy AJ, Read RJ.
- Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):458-69. Epub 2010 Mar 24.
- download pdf
- PHENIX: a comprehensive Python-based system for macromolecular structure solution.
- Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH.
- Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. Epub 2010 Jan 22.
- download pdf
2009
- Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
- Terwilliger TC, Adams PD, Read RJ, McCoy AJ , Moriarty NW, Grosse-Kunstleve RW, Afonine PV, Zwart PH, Hung LW.
- Acta Crystallogr D Biol Crystallogr. 2009 Jun;65(Pt 6):582-601
- download pdf
2008
- A structural explanation for the binding of endocytic dileucine motifs by the AP2 complex
- Kelly BT, McCoy AJ, Späte K, Miller SE, Evans PR, Höning S, Owen DJ.
- Nature. 2008 Dec 18;456(7224):976-79
- Nature (subscription required)
- An introduction to molecular replacement
- Evans P, McCoy A.
- Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):1-10. Epub 2007 Dec 5.
- download pdf
- Automated structure solution with the PHENIX suite
- Zwart PH, Afonine PV, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, McKee E, Moriarty NW, Read RJ, Sacchettini JC, Sauter NK, Storoni LC, Terwilliger TC, Adams PD.
- Methods Mol Biol. 2008;426:419-35.
- preview pdf doi Digital Object Identifier
2007
- A SNARE-adaptor interaction is a new mode of cargo recognition in clathrin-coated vesicles
- Miller SE, Collins BM, McCoy AJ, Robinson MS, Owen DJ.
- Nature. 2007 Nov 22;450(7169):570-4
- Nature (subscription required)
- High-resolution structure prediction and the crystallographic phase problem
- Qian B, Raman S, Das R, Bradley P, McCoy AJ, Read RJ, Baker D.
- Nature. 2007 Nov 8;450(7167):259-64. Epub 2007 Oct 14.
- Nature (subscription required)
- Solving structures of protein complexes by molecular replacement with Phaser
- McCoy AJ
- Acta Crystallogr D Biol Crystallogr. 2007 Jan;63(Pt 1):32-41. Epub 2006 Dec 13.
- download pdf
- Phaser crystallographic software
- McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC and Read RJ.
- J. Appl. Cryst. (2007). 40, 658-674.
- download pdf
- β-Edge interactions in a pentadecameric human antibody Vκ domain.
- James LC, Jones PC, McCoy A, Tennent GA, Pepys MB, Famm K, Winter G.
- J Mol Biol. 2007 Mar 30;367(3):603-8. Epub 2006 Nov 3.
- doi Digital Object Identifier
2006
- Crystal structure of rab11 in complex with rab11 family interacting protein 2
- Jagoe WN, Lindsay AJ, Read RJ, McCoy AJ, McCaffrey MW, Khan AR.
- Structure. 2006 Aug;14(8):1273-83.
- Structure (subscription required)
2005
- Likelihood-enhanced fast translation functions
- McCoy AJ, Grosse-Kunstleve RW, Storoni LC, Read RJ.
- Acta Crystallogr D Biol Crystallogr. 2005 Apr;61(Pt 4):458-64. Epub 2005 Mar 24.
- download pdf
2004
- Liking Likelihood
- McCoy AJ
- Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2169-83. Epub 2004 Nov 26.
- download pdf
- Simple algorithm for a maximum-likelihood SAD function
- McCoy AJ, Storoni LC, Read RJ.
- Acta Crystallogr D Biol Crystallogr. 2004 Jul;60(Pt 7):1220-8. Epub 2004 Jun 22.
- download pdf
- Likelihood-enhanced fast rotation functions
- Storoni LC, McCoy AJ, Read RJ.
- Acta Crystallogr D Biol Crystallogr. 2004 Mar;60(Pt 3):432-8. Epub 2004 Feb 25.
- download pdf
2003
- Recent developments in the PHENIX software for automated crystallographic structure determination
- Adams PD, Gopal K, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Pai RK, Read RJ, Romo TD, Sacchettini JC, Sauter NK, Storoni LC, Terwilliger TC.
- J Synchrotron Radiat. 2004 Jan 1;11(Pt 1):53-5. Epub 2003 Nov 28.
- download pdf
- Application of the complex multivariate normal distribution to crystallographic methods with insights into multiple isomorphous replacement phasing
- Pannu NS, McCoy AJ, Read RJ.
- Acta Crystallogr D Biol Crystallogr. 2003 Oct;59(Pt 10):1801-8. Epub 2003 Sep 19.
- download pdf
- Structure of β-antithrombin and the effect of glycosylation on antithrombin's heparin affinity and activity
- McCoy AJ, Pei XY, Skinner R, Abrahams JP, Carrell RW.
- J Mol Biol. 2003 Feb 21;326(3):823-33.
- doi Digital Object Identifier
2002
- New applications of maximum likelihood and Bayesian statistics in macromolecular crystallography
- McCoy AJ
- Curr Opin Struct Biol. 2002 Oct;12(5):670-3. Review.
- doi Digital Object Identifier
- PHENIX: building new software for automated crystallographic structure determination
- Adams PD, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Read RJ, Sacchettini JC, Sauter NK, Terwilliger TC.
- Acta Crystallogr D Biol Crystallogr. 2002 Nov;58(Pt 11):1948-54. Epub 2002 Oct 21.
- download pdf
- Molecular architecture and functional model of the endocytic AP2 complex
- Collins BM, McCoy AJ, Kent HM, Evans PR, Owen DJ.
- Cell. 2002 May 17;109(4):523-35.
- Cell (subscription required)
2001
- No publications
2000
- ScFv multimers of the anti-neuraminidase antibody NC10: shortening of the linker in single-chain Fv fragment assembled in V(L) to V(H) orientation drives the formation of dimers, trimers, tetramers and higher molecular mass multimers
- Dolezal O, Pearce LA, Lawrence LJ, McCoy AJ, Hudson PJ, Kortt AA.
- Protein Eng. 2000 Aug;13(8):565-74.
- download pdf
- The conformational activation of antithrombin. A 2.85-A structure of a fluorescein derivative reveals an electrostatic link between the hinge and heparin binding regions.
- Huntington JA*, McCoy A*, Belzar KJ, Pei XY, Gettins PG, Carrell RW.
- *authors contributed equally
- J Biol Chem. 2000 May 19;275(20):15377-83
- download pdf
1999
- Structural basis for dimerization of the Dictyostelium gelation factor (ABP120) rod
- McCoy AJ, Fucini P, Noegel AA, Stewart M.
- Nat Struct Biol. 1999 Sep;6(9):836-41.
- Nature Structural Biology (subscription required)
- scFv multimers of the anti-neuraminidase antibody NC10: length of the linker between VH and VL domains dictates precisely the transition between diabodies and triabodies
- Atwell JL, Breheney KA, Lawrence LJ, McCoy AJ, Kortt AA, Hudson PJ.
- Protein Eng. 1999 Jul;12(7):597-604.
- download pdf
- Engineered mutants in the switch II loop of Ran define the contribution made by key residues to the interaction with nuclear transport factor 2 (NTF2) and the role of this interaction in nuclear protein import
- Kent HM, Moore MS, Quimby BB, Baker AM, McCoy AJ, Murphy GA, Corbett AH, Stewart M.
- J Mol Biol. 1999 Jun 11;289(3):565-77.
- doi Digital Object Identifier
1998
- The structure of the Q69L mutant of GDP-Ran shows a major conformational change in the switch II loop that accounts for its failure to bind nuclear transport factor 2 (NTF2)
- Stewart M, Kent HM, McCoy AJ.
- J Mol Biol. 1998 Dec 18;284(5):1517-27.
- doi Digital Object Identifier
- Three-dimensional structures of single-chain Fv-neuraminidase complexes
- Malby RL*, McCoy AJ*, Kortt AA, Hudson PJ, Colman PM.
- *authors contributed equally
- J Mol Biol. 1998 Jun 19;279(4):901-10.
- doi Digital Object Identifier
- Structural basis for molecular recognition between nuclear transport factor 2 (NTF2) and the GDP-bound form of the Ras-family GTPase Ran
- Stewart M, Kent HM, McCoy AJ.
- J Mol Biol. 1998 Apr 3;277(3):635-46.
- doi Digital Object Identifier
- Structural basis for amoeboid motility in nematode sperm
- Bullock TL, McCoy AJ, Kent HM, Roberts TM, Stewart M.
- Nat Struct Biol. 1998 Mar;5(3):184-9.
- Nature Structural Biology (subscription required)
1997
- Crystallization and preliminary X-Ray diffraction characterization of a dimerizing fragment of the rod domain of the Dictyostelium gelation factor (ABP-120)
- Fucini P, McCoy AJ, Gomez-Ortiz M, Schleicher M, Noegel AA, Stewart M.
- J Struct Biol. 1997 Nov;120(2):192-5
- doi Digital Object Identifier
- Nuclear protein import is decreased by engineered mutants of nuclear transport factor 2 (NTF2) that do not bind GDP-Ran
- Clarkson WD, Corbett AH, Paschal BM, Kent HM, McCoy AJ, Gerace L, Silver PA, Stewart M.
- J Mol Biol. 1997 Oct 10;272(5):716-30.
- doi Digital Object Identifier
- The 1.8 Å crystal structure of winged bean albumin 1, the major albumin from Psophocarpus tetragonolobus (L.) DC
- McCoy AJ, Kortt AA.
- J Mol Biol. 1997 Jun 27;269(5):881-91.
- doi Digital Object Identifier
- Electrostatic complementarity at protein/protein interfaces
- McCoy AJ, Chandana Epa V, Colman PM.
- J Mol Biol. 1997 May 2;268(2):570-84.
- doi Digital Object Identifier
- Single-chain Fv fragments of anti-neuraminidase antibody NC10 containing five- and ten-residue linkers form dimers and with zero-residue linker a trimer
- Kortt AA, Lah M, Oddie GW, Gruen CL, Burns JE, Pearce LA, Atwell JL, McCoy AJ, Howlett GJ, Metzger DW, Webster RG, Hudson PJ.
- Protein Eng. 1997 Apr;10(4):423-33.
- download pdf
There are four other AJ McCoys publishing in biomedical science and cited in PubMed
Thus an author search for McCoy AJ in PubMed will lead to a combined publication list for all five of us. |