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| <div style="margin-left: 25px; float: right;">__NOTOC__</div> | | <div style="margin-left: 25px; float: right;">__NOTOC__</div> |
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− | Note that the use of Phaser is subject to [[Licences | '''licence conditions''']] | + | Note that the use of Phaser is subject to the University of Cambridge's [[Licences | '''Licences''']] |
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− | ==Phenix==
| + | ;Phenix |
− | ;Installation of Phaser with Phenix allows a choice of installation methods | + | :Phenix [http://www.phenix-online.org/download/nightly_builds.cgi?admin=1| Nightly Builds] |
− | *Precompiled executables for selected platforms
| + | :Phenix [http://www.phenix-online.org/download/ Official Releases] (recommended) |
− | :Linux and MacOS | + | ;CCP4 |
− | :Windows (limited functionality of other phenix components e.g. the phenix gui)
| + | :CCP4 [http://www.ccp4.ac.uk/dev/nightly/| Nightly Builds] |
− | *Source installations
| + | :CCP4 [http://www.ccp4.ac.uk/download.php Release] (recommended) |
− | *Phubuntu
| + | :'' Official releases will be made available through the CCP4 update mechanism'' |
− | :Phubuntu is an Ubuntu Linux boot iso file is available from the [http://www.phenix-online.org/download/ Phenix website]
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− | :Burn this file to a DVD and use it to boot your computer and run Phenix and Coot | |
− | :This method of installation is very useful for running tutorials/workshops with participants using their own laptops as it circumvents the problems associated participants having heterogeneous operating systems and different Phenix versions installed | |
− | :[[Phenix-Ubuntu | More information on Phubuntu]]
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− | ===Current Releases===
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− | ;Phaser-2.5.0 <span style="color:darkorange">''Under Construction''</span> | |
− | :Download with Phenix Package → [http://www.phenix-online.org/download/nightly_builds.cgi?admin=1| Nightly Builds] | |
− | ;Phaser-2.4.0
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− | :Download with Phenix Latest Official Release (recommended) 1.7.3-928 (6 Dec 2011) → [http://www.phenix-online.org/download/ Phenix Downloads] | |
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− | ==CCP4== | + | ==Phenix Installation== |
− | ===Current Releases===
| + | Installation of Phaser with Phenix allows a choice of installation methods |
− | ;Phaser-2.5.0 <span style="color:darkorange">''Under Construction''</span>
| + | ;Precompiled executables for selected platforms |
− | :Download with Test release of ccp4 v6.3.0. It is tagged as 6.2.993 and the tarballs are available on the ftp server ftp.ccp4.ac.uk/ccp4/6.2.993.
| + | *Linux |
− | :<span style="color:darkorange">''Warning: Known Bugs in this version (4th April 2012)''</span>
| + | *Windows |
− | ;Phaser-2.3.0 | + | *Mac OS |
− | :Download with CCP4 6.2 Package → [http://www.ccp4.ac.uk/download/ CCP4]
| + | |
− | ===Updating CCP4i===
| + | ;Source code installation |
− | ;Phaser-2.3.0
| + | :Phaser can be compiled from source on the above platforms from the Phenix distribution |
− | :Download CCP4 interfaces
| + | |
− | ::Molecular Replacement [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_MR_3.tar.gz Phaser_MR_3.tar.gz]
| + | ==CCP4 Installation== |
− | ::Experimental Phasing [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_EP_3.tar.gz Phaser_EP_3.tar.gz]
| + | ;Precompiled executables for selected platforms |
− | ::Normal Mode Analysis [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_NMA_3.tar.gz Phaser_NMA_3.tar.gz]
| + | *Linux |
− | :To install new Phaser GUI
| + | *Windows |
− | :# Make sure you have '''write permission''' for the directory where ccp4 is installed
| + | *Mac OS |
− | :# Start the CCP4 GUI (by entering "ccp4i" at the command line)
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− | :# Select the "System Administration" pull-down on the right-hand side of the CCP4 gui
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− | :# Select "Install Tasks"
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− | :# In the new window, in the "Task archive" box, enter <path-to>/Phaser_MR_3.tar.gz. Note that the file '''must''' be called Phaser_MR_3.tar.gz − '''Do not rename it'''
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− | :# The details of the Phaser gui installation will appear in the boxes
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− | :# Click "Apply" at the bottom of the window | |
− | :# Click "Accept" in the prompt box
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− | :To uninstall previous Phaser GUI
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− | :# Make sure you have '''write permission''' for the directory where ccp4 is installed
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− | :# Start the CCP4 GUI (by entering "ccp4i" at the command line)
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− | :# Select the "System Administration" pull-down on the right-hand side of the CCP4 gui
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− | :# Select "Install Tasks"
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− | :# In the top pulldown, Select '''Run the Installation Manager to''' "uninstall an existing task"
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− | :# In the new Choose Task to Uninstall folder, choose "Phaser". ''If there is no task called Phaser, you have not installed the ccp4i GUI for Phaser manually.''
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− | :# The details of the Phaser gui installation will appear in the boxes
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− | :# Click "Apply" at the bottom of the window
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− | :# Click "Proceed" in the prompt box
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− | :# Exit ccp4i
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− | :New GUI will not rerun jobs with old GUI
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− | ::Keyword input has changed. You cannot (reliably) rerun old phaser jobs in the new GUI (not backwardly compatible).
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