Difference between revisions of "Publications"

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[[Image:PDF_download.png]] PDF downloads available
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==Citation==
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;Phaser crystallographic software [http://scripts.iucr.org/cgi-bin/paper?he5368 '''J Appl Cryst''']
 +
:McCoy AJ, Grosse-Kunstleve RW,  Adams PD, Winn MD, Storoni LC, Read RJ
 +
:J. Appl. Cryst. (2007). 40, 658-674
 +
 
 +
==Reviews==
 +
;Using SAD data in Phaser [http://scripts.iucr.org/cgi-bin/paper?ba5159 '''Acta Cryst D''']
 +
:Read RJ, McCoy AJ
 +
:Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):338-344
 +
 
 +
;Experimental phasing<nowiki>:</nowiki> best practice and pitfalls [http://scripts.iucr.org/cgi-bin/paper?ba5142 '''Acta Cryst D''']
 +
:McCoy AJ, Read RJ
 +
:Acta Cryst. (2010) D66, 458-469.
  
;[http://antarctic/phaserwiki/images/b/b2/He5368.pdf Phaser crystallographic software ]
+
;An introduction to molecular replacement [http://scripts.iucr.org/cgi-bin/paper?ba5108 '''Acta Cryst D''']
:J. Appl. Cryst. (2007). 40, 658-674
+
:Evans P, McCoy A
:A. J. McCoy, R. W. Grosse-Kunstleve, P. D. Adams, M. D. Winn, L.C. Storoni, R.J. Read.
+
:Acta Cryst.(2008) D64, 1-10. Epub 2007 Dec 5.
  
;[http://antarctic/phaserwiki/images/4/40/Ba5095.pdf Solving structures of protein complexes by molecular replacement with Phaser ]
+
;Solving structures of protein complexes by molecular replacement with Phaser [http://scripts.iucr.org/cgi-bin/paper?ba5095  '''Acta Cryst D''']
 +
:McCoy AJ
 
:Acta Cryst. (2007). D63, 32-41
 
:Acta Cryst. (2007). D63, 32-41
:A. J. McCoy
 
  
;[http://antarctic/phaserwiki/images/6/63/Gx5042.pdf Likelihood-enhanced fast translation functions]
+
;Liking Likelihood [http://scripts.iucr.org/cgi-bin/paper?ba5064 '''Acta Cryst D''']
 +
:McCoy AJ
 +
:Acta Cryst. (2004). D60, 2169-2183
 +
 
 +
==Primary Citations==
 +
 
 +
;A log-likelihood-gain intensity target for crystallographic phasing that accounts for experimental error [http://scripts.iucr.org/cgi-bin/paper?dz5382 '''Acta Cryst D''']
 +
:Read RJ, McCoy AJ
 +
:Acta Cryst. (2016). D72, 375-387
 +
 
 +
;Phaser.MRage&#58; automated molecular replacement [http://scripts.iucr.org/cgi-bin/paper?ba5210 '''Acta Cryst D''']
 +
:Bunkoczi G, Echols N, McCoy AJ, Oeffner RD, Adams PD, Read RJ
 +
:Acta Cryst. (2013). D69, 2276-2286
 +
 
 +
;SCEDS&#58; protein fragments for molecular replacement in Phaser [http://scripts.iucr.org/cgi-bin/paper?ba5209 '''Acta Cryst D''']
 +
:McCoy AJ, Nicholls RA, Schneider TR
 +
:Acta Cryst. (2013). D69, 2216-2225
 +
 
 +
;Improved estimates of coordinate error for molecular replacement [http://scripts.iucr.org/cgi-bin/paper?ba5212 '''Acta Cryst D''']
 +
:Oeffner RD, Bunkocz G, McCoy AJ, Read RJ
 +
:Acta Cryst. (2013). D69, 2209-2215
 +
 
 +
;Intensity statistics in the presence of translational non-crystallographic symmetry [http://scripts.iucr.org/cgi-bin/paper?dz5268 '''Acta Cryst D''']
 +
:Read RJ, Adams PD, McCoy AJ
 +
:Acta Cryst. (2013). D69, 176-183
 +
 
 +
;Improvement of molecular replacement models with ''Sculptor'' [http://scripts.iucr.org/cgi-bin/paper?ba5163 '''Acta Cryst D''']
 +
:Bunkoczi G, Read RJ
 +
:Acta Cryst. (2011). D67, 303-312
 +
 
 +
;Likelihood-enhanced fast translation functions [http://scripts.iucr.org/cgi-bin/paper?gx5042 '''Acta Cryst D''']
 +
:McCoy AJ, Grosse-Kunstleve RW, Storoni LC, Read RJ
 
:Acta Cryst. (2005). D61, 458-464
 
:Acta Cryst. (2005). D61, 458-464
:A. J. McCoy, R. W. Grosse-Kunstleve, L. C. Storoni, R. J. Read.
 
 
;[http://antarctic/phaserwiki/images/4/46/Ba5064.pdf Liking Likelihood ]
 
:Acta Cryst. (2004). D60, 2169-2183
 
:A. J. McCoy
 
  
;[http://antarctic/phaserwiki/images/c/c3/Ea5015.pdf Simple algorithm for a maximum-likelihood SAD function]
+
;Simple algorithm for a maximum-likelihood SAD function [http://scripts.iucr.org/cgi-bin/paper?ea5015 '''Acta Cryst D''']
 +
:McCoy AJ, Storoni LC,  Read RJ
 
:Acta Cryst. (2004). D60, 1220-1228
 
:Acta Cryst. (2004). D60, 1220-1228
:A. J. McCoy, L. C. Storoni, R. J. Read.
 
  
;[http://antarctic/phaserwiki/images/3/3a/Ad5007.pdf Likelihood-enhanced fast rotation functions]
+
;Likelihood-enhanced fast rotation functions [http://scripts.iucr.org/cgi-bin/paper?ad5007 '''Acta Cryst D'''] [http://www-structmed.cimr.cam.ac.uk/Personal/randy/pubs/ad5007.pdf '''pdf''']
 +
:Storoni LC, McCoy AJ, Read RJ
 
:Acta Cryst. (2004). D60, 432-438
 
:Acta Cryst. (2004). D60, 432-438
:L. C. Storoni, A. J. McCoy, R. J. Read.
 
  
;[http://antarctic/phaserwiki/images/a/a6/Ba5014r.pdf Pushing the boundaries of molecular replacement with maximum likelihood]
+
;Pushing the boundaries of molecular replacement with maximum likelihood [http://scripts.iucr.org/cgi-bin/paper?ba5014 '''Acta Cryst D''']
 +
:Read RJ
 
:Acta Cryst. (2001). D57, 1373-1382
 
:Acta Cryst. (2001). D57, 1373-1382
:R. J. Read.
 

Revision as of 13:29, 25 April 2016

Citation

Phaser crystallographic software J Appl Cryst
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ
J. Appl. Cryst. (2007). 40, 658-674

Reviews

Using SAD data in Phaser Acta Cryst D
Read RJ, McCoy AJ
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):338-344
Experimental phasing: best practice and pitfalls Acta Cryst D
McCoy AJ, Read RJ
Acta Cryst. (2010) D66, 458-469.
An introduction to molecular replacement Acta Cryst D
Evans P, McCoy A
Acta Cryst.(2008) D64, 1-10. Epub 2007 Dec 5.
Solving structures of protein complexes by molecular replacement with Phaser Acta Cryst D
McCoy AJ
Acta Cryst. (2007). D63, 32-41
Liking Likelihood Acta Cryst D
McCoy AJ
Acta Cryst. (2004). D60, 2169-2183

Primary Citations

A log-likelihood-gain intensity target for crystallographic phasing that accounts for experimental error Acta Cryst D
Read RJ, McCoy AJ
Acta Cryst. (2016). D72, 375-387
Phaser.MRage: automated molecular replacement Acta Cryst D
Bunkoczi G, Echols N, McCoy AJ, Oeffner RD, Adams PD, Read RJ
Acta Cryst. (2013). D69, 2276-2286
SCEDS: protein fragments for molecular replacement in Phaser Acta Cryst D
McCoy AJ, Nicholls RA, Schneider TR
Acta Cryst. (2013). D69, 2216-2225
Improved estimates of coordinate error for molecular replacement Acta Cryst D
Oeffner RD, Bunkocz G, McCoy AJ, Read RJ
Acta Cryst. (2013). D69, 2209-2215
Intensity statistics in the presence of translational non-crystallographic symmetry Acta Cryst D
Read RJ, Adams PD, McCoy AJ
Acta Cryst. (2013). D69, 176-183
Improvement of molecular replacement models with Sculptor Acta Cryst D
Bunkoczi G, Read RJ
Acta Cryst. (2011). D67, 303-312
Likelihood-enhanced fast translation functions Acta Cryst D
McCoy AJ, Grosse-Kunstleve RW, Storoni LC, Read RJ
Acta Cryst. (2005). D61, 458-464
Simple algorithm for a maximum-likelihood SAD function Acta Cryst D
McCoy AJ, Storoni LC, Read RJ
Acta Cryst. (2004). D60, 1220-1228
Likelihood-enhanced fast rotation functions Acta Cryst D pdf
Storoni LC, McCoy AJ, Read RJ
Acta Cryst. (2004). D60, 432-438
Pushing the boundaries of molecular replacement with maximum likelihood Acta Cryst D
Read RJ
Acta Cryst. (2001). D57, 1373-1382