Phaser-2.7 series changelog - Revision history

Airlie at 12:03, 24 November 2016

2016-11-24T12:03:29Z

Airlie at 11:25, 13 September 2016

2016-09-13T11:25:23Z

Airlie at 14:39, 4 August 2016

2016-08-04T14:39:23Z

Airlie at 12:56, 4 August 2016

2016-08-04T12:56:28Z

Airlie: Created page with ";Phaser 2.7.0 * No functional changes from 2.6 series * Major changes to internal data structures :: Ensemble parameters either input or worked out on input ::: One point of c..."

2016-08-04T11:06:18Z

Created page with ";Phaser 2.7.0 * No functional changes from 2.6 series * Major changes to internal data structures :: Ensemble parameters either input or worked out on input ::: One point of c..."

New page

;Phaser 2.7.0
* No functional changes from 2.6 series
* Major changes to internal data structures
:: Ensemble parameters either input or worked out on input
::: One point of calculation for e.g. mean radius
:: Indexing of values in ensemble/model arrays consistent
::: e.g. Wilson B and VRMS
:: Enables additions to functionality to come
:: Some bugs identified during data structure rationalization
* Introduce phaser --changelog
:: Formal tracking of changes

← Older revision		Revision as of 12:03, 24 November 2016
Line 1:		Line 1:
		+	;Phaser-2.7.17
		+	*add feature to filter out data with low information content
		+	*bugfixes
		+	:solution history formatting
		+	:R-value test with multiple search components failing
		+	:limit number of permutations in amalgamation to stop combinatorial explosion
		+	:correct handling of effect of experimental error in fast rotation function
		+	:search method full & permutations on had corrupted search ensemble copy numbers
		+	;Phaser-2.7.16
		+	*add option to allow input SAD atoms to change atom type during refinement
		+	*bugfixes
		+	:packing checked performed on input solution in auto mode
		+	:packing checked performed on final solution after refinement in auto mode
		+	;Phaser-2.7.15
		+	:only top fast translation function peaks checked for packing, if not a helix
	;Phaser-2.7.14		;Phaser-2.7.14
	*solution coodinates placed nearest to input coordinates if possible		*solution coodinates placed nearest to input coordinates if possible

← Older revision		Revision as of 11:25, 13 September 2016
Line 1:		Line 1:
		+	;Phaser-2.7.14
		+	*solution coodinates placed nearest to input coordinates if possible
		+	*logfile width extended
		+	*default number of processors for parallelization increased to 4
		+	;Phaser-2.7.13
		+	*support for unicode
	;Phaser-2.7.12		;Phaser-2.7.12
	*GIMBLE refinement, which splits ensembles by chain for rigid body refinement		*GIMBLE refinement, which splits ensembles by chain for rigid body refinement

@@ Line 50: / Line 50: @@
 ;Phaser-2.7.3
 *improve tests for RMS correlations between members of an ensemble
 ;Phaser-2.7.2
-*determine number of (average scattering) residues required to achieve target eLLG
+*determine number of average scattering residues required to achieve target eLLG
 *bugfixes
 : header for Rotation Gyration Refinement mode corrected

@@ Line 1: / Line 1: @@
-;Phaser 2.7.0
+;Phaser-2.7.12
 * No functional changes from 2.6 series
-* Major changes to internal data structures
+*new internal data structures for ensembles
-:: Ensemble parameters either input or worked out on input
+: ensemble parameters either input or worked out on input
-::: One point of calculation for e.g. mean radius
+: Indexing of values in ensemble/model arrays consistent
-:: Indexing of values in ensemble/model arrays consistent
+*introduce command line flag --changelog gives changelog and bugfixes from previous version
-::: e.g. Wilson B and VRMS
+: formal tracking of changes
-:: Enables additions to functionality to come
+*bugfixes
-:: Some bugs identified during data structure rationalization
+: Wilson B-factor not being carried internally or used correctly for output pdb files
-* Introduce phaser --changelog
+: ID being used as RMS is eLLG calculation in MODE MR_FRF