Phaser Crystallographic Software - Revision history

Airlie at 16:08, 15 January 2020

2020-01-15T16:08:21Z

Airlie at 08:14, 17 April 2018

2018-04-17T08:14:28Z

Airlie: /* Currently Supported Releases */

2018-02-27T16:14:05Z

‎Currently Supported Releases

Airlie: /* Currently Supported Releases */

2016-11-24T11:59:42Z

‎Currently Supported Releases

Airlie: /* Phaser-2.7.16 */

2016-11-01T15:15:52Z

‎Phaser-2.7.16

Airlie: /* Phaser-2.7.16 */

2016-10-26T14:14:25Z

‎Phaser-2.7.16

Airlie: /* Currently Supported Releases */

2016-10-11T11:01:09Z

‎Currently Supported Releases

Airlie: /* Phaser-2.7.15 */

2016-10-11T09:47:38Z

‎Phaser-2.7.15

Airlie: /* Phaser-2.7.14 */

2016-10-11T09:46:37Z

‎Phaser-2.7.14

Airlie: /* Currently Supported Releases */

2016-09-28T09:23:14Z

‎Currently Supported Releases

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 Use the '''sidebar''' to navigate through the extensive documentation for Phaser.
-<!-- index.php/MediaWiki:Sidebar-->
+<!-- https://www.phaser.cimr.cam.ac.uk/index.php/MediaWiki:Sidebar -->
 ''This PhaserWiki supersedes the obsolete [http://www-structmed.cimr.cam.ac.uk/phaser/ Phaser homepage], which now redirects to this wiki. A copy of the obsolete Phaser homepage can be found [http://www-structmed.cimr.cam.ac.uk/phaser_obsolete/ here]''

← Older revision		Revision as of 08:14, 17 April 2018
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	''This PhaserWiki supersedes the obsolete [http://www-structmed.cimr.cam.ac.uk/phaser/ Phaser homepage], which now redirects to this wiki. A copy of the obsolete Phaser homepage can be found [http://www-structmed.cimr.cam.ac.uk/phaser_obsolete/ here]''		''This PhaserWiki supersedes the obsolete [http://www-structmed.cimr.cam.ac.uk/phaser/ Phaser homepage], which now redirects to this wiki. A copy of the obsolete Phaser homepage can be found [http://www-structmed.cimr.cam.ac.uk/phaser_obsolete/ here]''
		+
		+	For Data Protection information see [http://www.cam.ac.uk/about-this-site/privacy-policy Cambridge University Privacy Policy]

	==Currently Supported Releases==		==Currently Supported Releases==

@@ Line 8: / Line 8: @@
 ==Currently Supported Releases==
 ====Phaser-2.7.17====
 :Download with Phenix Nightly Builds → [http://www.phenix-online.org/download/ Phenix ]

@@ Line 8: / Line 8: @@
 ==Currently Supported Releases==
 ====Phaser-2.7.16====
 <!--:Download with Phenix Nightly Builds → [http://www.phenix-online.org/download/ Phenix ]-->
 :Download with Phenix Official Release 1.11.1 (October 2016) → [http://www.phenix-online.org/download/ Phenix ]
 :Documentation  → [[Phaser-2.7.15: Manual | Manual]]
 ''Changelog highlights''
@@ Line 33: / Line 44: @@
 :* support for unicode
 :* solution coordinates placed nearest to input coordinates if possible
 <!--====Phaser-2.5.6-beta &nbsp;&nbsp; <span style="color:darkorange">''*unstable*''</span>==== -->

@@ Line 11: / Line 11: @@
 ====Phaser-2.7.16====
 <!--:Download with Phenix Nightly Builds → [http://www.phenix-online.org/download/ Phenix ]-->
-:Download with Phenix Official Release 1.11 (October 2016) → [http://www.phenix-online.org/download/ Phenix ]
+:Download with Phenix Official Release 1.11.1 (October 2016) → [http://www.phenix-online.org/download/ Phenix ]
 :Download with CCP4 Nightly Builds  → [http://devtools.fg.oisin.rc-harwell.ac.uk/nightly/ CCP4]
 :Documentation  → [[Phaser-2.7.15: Manual | Manual]]

@@ Line 9: / Line 9: @@
 ==Currently Supported Releases==
-====Phaser-2.7.14====
+====Phaser-2.7.15====
 :Download with Phenix Nightly Builds → [http://www.phenix-online.org/download/ Phenix ]
 :Download with CCP4 Nightly Builds  → [http://devtools.fg.oisin.rc-harwell.ac.uk/nightly/ CCP4]
@@ Line 17: / Line 17: @@
 :* selection by CHAIN and MODEL for PDB coordinate entry
 :* ensemble member rmsds adjusted to give values consistent with rmsd between members of an ensemble
-:* automatic search number for single search ensemble
+:* automatic search number for search ensemble(s)
 :* packing trace can be entered independently of coordinates and map (can mask larger volume than model)
 :* read TNCS/anisotropy binary files to avoid refinement (non-python interface)

@@ Line 13: / Line 13: @@
 :Download with CCP4 Nightly Builds  → [http://devtools.fg.oisin.rc-harwell.ac.uk/nightly/ CCP4]
 :Documentation  → [[Phaser-2.7.14: Manual | Manual]]
-''Changes''
+''Changelog highlights''
 :* SOLUTION HISTORY tracks solution through positions in RF/TF/PAK/RNP peak lists
 :* selection by CHAIN and MODEL for PDB coordinate entry
 :* automatic search number for single search ensemble
-:* packing 'trace' molecule can be entered independently of coordinates and map, to give possibility of masking larger volume in packing than model for MR
+:* packing trace can be entered independently of coordinates and map (can mask larger volume than model)
 :* read TNCS/anisotropy binary files to avoid refinement (non-python interface)
 :* write TNCS and anisotropy parameters to binary files (non-python interface)
 :* default reading of I (or failing that, F) from mtz file (LABIN optional)
 :* trace for ensembles from maps = hexgrid of 1000+/-100 points
-:* trace for ensembles from coordinates above 1000 Calpha = hexgrid of 1000+/-100 points
+:* trace for ensembles from coordinates above 1000 C-alpha = hexgrid of 1000+/-100 points
-:* trace for ensembles from coordinates twixt 1000 atoms and 1000 Calpha = Calpha atoms
+:* trace for ensembles from coordinates between 1000 atoms and 1000 C-alpha = Calpha atoms
 :* trace for ensembles from coordinates under 1000 atoms = all atoms
 :* packing by pairwise percent only, other packing modes obsoleted
@@ Line 29: / Line 30: @@
 :* automatic tNCS NMOL determination in presence of commensurate modulation
 :* added MODE GIMBLE, which splits ensembles by chain for rigid body refinement
 :* support for unicode
 :* solution coordinates placed nearest to input coordinates if possible