SCEDS for MR (using keyword input) - Revision history

Airlie: /* Calmodulin */

2014-04-29T10:35:27Z

‎Calmodulin

Airlie: /* Calmodulin */

2014-04-29T10:35:14Z

‎Calmodulin

Airlie: /* Calmodulin */

2014-04-29T10:33:12Z

‎Calmodulin

Airlie: Start SCEDS for MR tutorial

2014-04-28T14:05:16Z

Start SCEDS for MR tutorial

New page

===Calmodulin===

Data for this tutorial are found [http://www.phaser.cimr.cam.ac.uk/index.php/Tutorials here]

Coordinates: 1.pdb

This tutorial demonstrates SCEDS domain division followed by MR using the domains generated

# Look at the logfile
#* What are the residues included in each of the SCEDS domains produced?
#* Find the normal modes used for the perturbation that generated the SCEDS domains.
#* Find the number of residues not included in any of the top domains.
# Look at the pdb files containing the domains with Coot

[[Category:Tutorial]]

← Older revision		Revision as of 10:35, 29 April 2014
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−	===Calmodulin===	+	===Calmodulin (Open)===

	Data for this tutorial are found [http://www.phaser.cimr.cam.ac.uk/index.php/Tutorials here]		Data for this tutorial are found [http://www.phaser.cimr.cam.ac.uk/index.php/Tutorials here]

@@ Line 6: / Line 6: @@
   Reflections: 1ctr.mtz
   Sequence:    1CTR.seq
 This tutorial demonstrates SCEDS domain division followed by MR using the domains generated
@@ Line 16: / Line 17: @@
   eof
   phaser << eof >> sceds_tutorial.log
   MODE MR_AUTO
@@ Line 33: / Line 35: @@
 #* Find the number of residues not included in any of the top domains.
 # Look at the pdb files containing the domains with Coot
 [[Category:Tutorial]]

@@ Line 3: / Line 3: @@
 Data for this tutorial are found [http://www.phaser.cimr.cam.ac.uk/index.php/Tutorials here]
-  Coordinates: 1.pdb
+  Coordinates: 1CLL.pdb
 This tutorial demonstrates SCEDS domain division followed by MR using the domains generated
 # Look at the logfile