Tutorials - Revision history

Randy: Delete reference to Phubuntu, which is no longer relevant.

2016-04-06T11:16:32Z

Delete reference to Phubuntu, which is no longer relevant.

2015-01-19T14:03:18Z

2015-01-13T18:50:22Z

move example script links from manuals to tutorial pages

2014-11-26T13:21:58Z

2014-04-28T14:03:14Z

add sceds for mr link

2013-07-22T13:12:35Z

2013-07-22T11:38:56Z

2013-07-17T12:53:38Z

2013-07-05T10:52:33Z

2012-08-01T22:29:02Z

@@ Line 17: / Line 17: @@
 :* [[SCEDS for MR (using keyword input)|SCEDS for MR]]
 :* [[NMA Coordinate Perturbation using CCP4i|NMA Coordinate Perturbation using CCP4i]]
 ;Coot script for Normal Mode Analysis - Perturbations (NMAXYZ)

← Older revision		Revision as of 14:03, 19 January 2015
Line 18:		Line 18:
	:* [[NMA Coordinate Perturbation using CCP4i\|NMA Coordinate Perturbation using CCP4i]]		:* [[NMA Coordinate Perturbation using CCP4i\|NMA Coordinate Perturbation using CCP4i]]

		+	;Phubuntu
		+	:Phubuntu is an Ubuntu Linux boot iso file is available from [http://www.phenix-online.org/download/ Phenix]
		+	:This method of installation is very useful for running tutorials/workshops with participants using their own laptops as it circumvents the problems associated participants having heterogeneous operating systems and different Phenix versions installed
		+	:Burn this file to a DVD and use it to boot your computer and run Phenix and Coot
		+	:[[Phenix-Ubuntu \| More information on Phubuntu]]

	;Coot script for Normal Mode Analysis - Perturbations (NMAXYZ)		;Coot script for Normal Mode Analysis - Perturbations (NMAXYZ)

← Older revision		Revision as of 18:50, 13 January 2015
Line 1:		Line 1:
		+	;Example Scripts
		+	:Copy and edit to start using Phaser
		+	:* [[Keyword Example Scripts \| Keyword Example Scripts]]
		+	:* [[Python Example Scripts \| Python Example Scripts ]]
		+
	;Tutorials		;Tutorials
	:The tutorials are suitable for individual use or class teaching.		:The tutorials are suitable for individual use or class teaching.

@@ Line 12: / Line 12: @@
 :* [[SCEDS for MR (using keyword input)|SCEDS for MR]]
 :* [[NMA Coordinate Perturbation using CCP4i|NMA Coordinate Perturbation using CCP4i]]
 ;Data

@@ Line 10: / Line 10: @@
 :* [[EP using Phenix|EP using Phenix]]
 :* [[SCEDS using CCP4i|SCEDS using CCP4i]]
 :* [[NMA Coordinate Perturbation using CCP4i|NMA Coordinate Perturbation using CCP4i]]

@@ Line 9: / Line 9: @@
 :* [[Combined MR-SAD using CCP4i|Combined MR-SAD using CCP4i]]
 :* [[EP using Phenix|EP using Phenix]]
 ;Data
-:The coordinate (pdb), sequence (fasta) and reflection (mtz) files required to run the tutorials are distributed with Phaser.
+:The coordinate (pdb), sequence (fasta) and reflection (mtz) files required to run the MR tutorials are distributed with Phaser.
-:They can also be obtained from:
 :[[Image:Download.png|link=]] [http://www-structmed.cimr.cam.ac.uk/phaser/tutorial/phaser-mr-tutorial.tar.gz  Data for Molecular Replacement Examples and Tutorials]
 :[[Image:Download.png|link=]] [http://www-structmed.cimr.cam.ac.uk/phaser/tutorial/phaser-ep-tutorial.tar.gz  Data for Experimental Phasing Examples and Tutorials]
 ;References
 : The crystal structure of a hetero-dimer of beta-lactamase (BETA) and beta-lactamase inhibitor protein (BLIP), both with molecular replacement models from crystal structures of the individual BETA and BLIP components. We thank Mike James and Natalie Strynadka for the diffraction data. Reference: Strynadka, N.C.J., Jensen, S.E., Alzari, P.M. &amp; James. M.N.G. (1996) ''Nat. Struct. Biol.'' '''3''' 290-297.
 : The crystal structure of insulin phased on intrinsic sulphurs. We thank Paul Adams for the diffraction data. Reference: Adams (2001) ''Acta Cryst'' D'''57'''. 990-995.

@@ Line 5: / Line 5: @@
 :* [[MR using keyword input|MR using keyword input]]
 :* [[Finding a search model:TOXD|Finding a search model:TOXD]]
 :* [[SAD using CCP4i|SAD using CCP4i]]
 :* [[Combined MR-SAD using CCP4i|Combined MR-SAD using CCP4i]]