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| | <div style="margin-left: 25px; float: right;">__NOTOC__</div> | | <div style="margin-left: 25px; float: right;">__NOTOC__</div> |
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| − | Note that the use of Phaser is subject to [[Licences | '''licence conditions''']] | + | Note that the use of Phaser is subject to the University of Cambridge's [[Licences | '''Licences''']] |
| | | | |
| − | ==Phenix==
| + | ;Phenix |
| − | ;Installation of Phaser with Phenix allows a choice of installation methods | + | :Phenix [http://www.phenix-online.org/download/nightly_builds.cgi?admin=1| Nightly Builds] |
| − | *Precompiled executables for selected platforms
| + | :Phenix [http://www.phenix-online.org/download/ Official Releases] (recommended) |
| − | :Linux and MacOS | + | ;CCP4 |
| − | :Windows (limited functionality of other phenix components e.g. the phenix gui)
| + | :CCP4 [http://www.ccp4.ac.uk/dev/nightly/| Nightly Builds] |
| − | *Source installations
| + | :CCP4 [http://www.ccp4.ac.uk/download.php Release] (recommended) |
| − | *Phubuntu
| + | :'' Official releases will be made available through the CCP4 update mechanism'' |
| − | :Phubuntu is an Ubuntu Linux boot iso file is available from [http://www.phenix-online.org/download/ Phenix]
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| − | :Burn this file to a DVD and use it to boot your computer and run Phenix and Coot | |
| − | :This method of installation is very useful for running tutorials/workshops with participants using their own laptops as it circumvents the problems associated participants having heterogeneous operating systems and different Phenix versions installed | |
| − | :[[Phenix-Ubuntu | More information on Phubuntu]]
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| − | ===Current Releases===
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| − | ;Phaser-2.5.0 <span style="color:darkorange">''Under Construction''</span> | |
| − | :Download with Phenix Package → [http://www.phenix-online.org/download/nightly_builds.cgi?admin=1| Nightly Builds] | |
| − | ;Phaser-2.4.0
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| − | :Download with Phenix Latest Official Release (recommended) 1.7.3-928 (6 Dec 2011) → [http://www.phenix-online.org/download/ Phenix Downloads] | |
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| − | ==CCP4== | + | ==Phenix Installation== |
| − | ===Current Releases===
| + | Installation of Phaser with Phenix allows a choice of installation methods |
| − | ;Phaser-2.5.0 <span style="color:darkorange">''Under Construction''</span>
| + | ;Precompiled executables for selected platforms |
| − | :Download with Test release of ccp4 v6.3.0. It is tagged as 6.2.993 and the tarballs are available on the ftp server ftp.ccp4.ac.uk/ccp4/6.2.993.
| + | *Linux |
| − | :<span style="color:darkorange">''Warning: Known Bugs in this version (4th April 2012)''</span>
| + | *Windows |
| − | ;Phaser-2.3.0 | + | *Mac OS |
| − | :Download with CCP4 6.2 Package → [http://www.ccp4.ac.uk/download/ CCP4]
| + | |
| − | ===Updating CCP4i===
| + | ;Source code installation |
| − | ;Phaser-2.5.0 <span style="color:darkorange">''Under Construction''</span>
| + | :Phaser can be compiled from source on the above platforms from the Phenix distribution |
| − | :Link files distributed with source code to ccp4i directory
| + | |
| − | ;Phaser-2.3.0 | + | ==CCP4 Installation== |
| − | :Download CCP4 interfaces
| + | ;Precompiled executables for selected platforms |
| − | :#Molecular Replacement [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_MR_3.tar.gz Phaser_MR_3.tar.gz]
| + | *Linux |
| − | :#Experimental Phasing [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_EP_3.tar.gz Phaser_EP_3.tar.gz] | + | *Windows |
| − | :#Normal Mode Analysis [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_NMA_3.tar.gz Phaser_NMA_3.tar.gz]
| + | *Mac OS |
| − | :To install new Phaser GUI
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| − | :# Make sure you have '''write permission''' for the directory where ccp4 is installed
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| − | :# Start the CCP4 GUI (by entering "ccp4i" at the command line)
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| − | :# Select the "System Administration" pull-down on the right-hand side of the CCP4 gui
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| − | :# Select "Install Tasks"
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| − | :# In the new window, in the "Task archive" box, enter <path-to>/Phaser_MR_3.tar.gz. Note that the file '''must''' be called Phaser_MR_3.tar.gz − '''Do not rename it'''
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| − | :# The details of the Phaser gui installation will appear in the boxes
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| − | :# Click "Apply" at the bottom of the window
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| − | :# Click "Accept" in the prompt box
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| − | :To uninstall previous Phaser GUI
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| − | :# Make sure you have '''write permission''' for the directory where ccp4 is installed
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| − | :# Start the CCP4 GUI (by entering "ccp4i" at the command line)
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| − | :# Select the "System Administration" pull-down on the right-hand side of the CCP4 gui
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| − | :# Select "Install Tasks"
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| − | :# In the top pulldown, Select '''Run the Installation Manager to''' "uninstall an existing task"
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| − | :# In the new Choose Task to Uninstall folder, choose "Phaser". ''If there is no task called Phaser, you have not installed the ccp4i GUI for Phaser manually.''
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| − | :# The details of the Phaser gui installation will appear in the boxes
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| − | :# Click "Apply" at the bottom of the window
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| − | :# Click "Proceed" in the prompt box
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| − | :# Exit ccp4i
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| − | :New GUI will not rerun jobs with old GUI
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| − | ::Keyword input has changed. You cannot (reliably) rerun old phaser jobs in the new GUI (not backwardly compatible).
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