Publications
From Phaserwiki
Citation
- Phaser crystallographic software J Appl Cryst
- McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ
- J. Appl. Cryst. (2007). 40, 658-674
Reviews
- Using SAD data in Phaser Acta Cryst D
- Read RJ, McCoy AJ
- Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):338-344
- Experimental phasing: best practice and pitfalls Acta Cryst D
- McCoy AJ, Read RJ
- Acta Cryst. (2010) D66, 458-469.
- An introduction to molecular replacement Acta Cryst D
- Evans P, McCoy A
- Acta Cryst.(2008) D64, 1-10. Epub 2007 Dec 5.
- Solving structures of protein complexes by molecular replacement with Phaser Acta Cryst D
- McCoy AJ
- Acta Cryst. (2007). D63, 32-41
- Liking Likelihood Acta Cryst D
- McCoy AJ
- Acta Cryst. (2004). D60, 2169-2183
Primary Citations
- Likelihood-based interactive local docking into cryo-EM maps in ChimeraX Acta Cryst D
- Read RJ, Pettersen EF, McCoy AJ, Croll TI, Terwilliger TC, Poon BK, Meng EC, Liebschner D, Adams PD
- Acta Cryst. (2024). D80, 588-598
- Likelihood-based docking of models into cryo-EM maps Acta Cryst D
- Millán C, McCoy AJ, Terwilliger TC, Read RJ
- Acta Cryst. (2023). D79, 281-289
- Likelihood-based signal and noise analysis for docking of models into cryo-EM maps Acta Cryst D
- Read RJ, Millán C, McCoy AJ, Terwilliger TC
- Acta Cryst. (2023). D79, 271-280.
- Putting AlphaFold models to work with phenix.process_predicted_model and ISOLDE Acta Cryst D
- Oeffner RD, Croll TI, Millán C, Poon BK, Schlicksup CJ, Read RJ, Terwilliger TC
- Acta Cryst. (2022). D78, 1303-1314
- Implications of AlphaFold2 for crystallographic phasing by molecular replacement Acta Cryst D
- McCoy AJ, Sammito MD, Read RJ
- Acta Cryst. (2022). D78, 1-13
- Likelihood-based estimation of substructure content from single-wavelength anomalous diffraction (SAD) intensity data Acta Cryst D
- Hatti KS, McCoy AJ, Read RJ
- Acta Cryst. (2021). D77, 880-893
- Detection of translational noncrystallographic symmetry in Patterson functions Acta Cryst D
- Caballero I, Sammito MD, Afonine PV, Usón I, Read RJ, McCoy AJ
- Acta Cryst. (2021). D77, 131-141
- Phasertng: directed acyclic graphs for crystallographic phasing Acta Cryst D
- McCoy AJ, Stockwell DH, Sammito MD, Oeffner RD, Hatti KS, Croll TI, Read RJ
- Acta Cryst. (2021). D77, 1-10
- Measuring and using information gained by observing diffraction data Acta Cryst D
- Read RJ, Oeffner RD, McCoy AJ
- Acta Cryst. (2020). D76, 238-247
- Factors influencing estimates of coordinate error for molecular replacement Acta Cryst D
- Hatti KS, McCoy AJ, Oeffner RD, Sammito MD, Read RJ
- Acta Cryst. (2020). D76, 19-27
- Coping with strong translational non-crystallographic symmetry and extreme anisotropy in molecular replacement with Phaser: human Rab27a Acta Cryst D
- Jamshidiha M, Pérez-Dorado I, Murray JW, Tate EW, Cota E, Read RJ
- Acta Cryst. (2019). D75, 342-353
- Gyre and gimble: a maximum-likelihood replacement for Patterson correlation refinement Acta Cryst D
- McCoy AJ, Oeffner RD, Millán, Sammito M, Usón, Read RJ
- Acta Cryst. (2018). D74, 279-289
- On the application of the expected log-likelihood gain to decision making in molecular replacement Acta Cryst D
- Oeffner RD, Afonine PV, Millán C, Sammito M, Usón I, Read RJ, McCoy AJ
- Acta Cryst. (2018). D74, 245-255
- Maximum-likelihood determination of anomalous substructures Acta Cryst D
- Read RJ and McCoy AJ
- Acta Cryst. (2018). D74, 89-105
- Ab initio solution of macromolecular crystal structures without direct methods PNAS
- McCoy AJ, Oeffner RD, Wrobel AG, Ojala JRM, Tryggvason K, Lohkamp B, Read RJ
- Proc. Natl. Acad. Sci. USA (2017). 114, 3637-3641
- A log-likelihood-gain intensity target for crystallographic phasing that accounts for experimental error Acta Cryst D
- Read RJ, McCoy AJ
- Acta Cryst. (2016). D72, 375-387
- Phaser.MRage: automated molecular replacement Acta Cryst D
- Bunkoczi G, Echols N, McCoy AJ, Oeffner RD, Adams PD, Read RJ
- Acta Cryst. (2013). D69, 2276-2286
- SCEDS: protein fragments for molecular replacement in Phaser Acta Cryst D
- McCoy AJ, Nicholls RA, Schneider TR
- Acta Cryst. (2013). D69, 2216-2225
- Improved estimates of coordinate error for molecular replacement Acta Cryst D
- Oeffner RD, Bunkocz G, McCoy AJ, Read RJ
- Acta Cryst. (2013). D69, 2209-2215
- Intensity statistics in the presence of translational non-crystallographic symmetry Acta Cryst D
- Read RJ, Adams PD, McCoy AJ
- Acta Cryst. (2013). D69, 176-183
- Improvement of molecular replacement models with Sculptor Acta Cryst D
- Bunkoczi G, Read RJ
- Acta Cryst. (2011). D67, 303-312
- Likelihood-enhanced fast translation functions Acta Cryst D
- McCoy AJ, Grosse-Kunstleve RW, Storoni LC, Read RJ
- Acta Cryst. (2005). D61, 458-464
- Simple algorithm for a maximum-likelihood SAD function Acta Cryst D
- McCoy AJ, Storoni LC, Read RJ
- Acta Cryst. (2004). D60, 1220-1228
- Likelihood-enhanced fast rotation functions Acta Cryst D pdf
- Storoni LC, McCoy AJ, Read RJ
- Acta Cryst. (2004). D60, 432-438
- Pushing the boundaries of molecular replacement with maximum likelihood Acta Cryst D
- Read RJ
- Acta Cryst. (2001). D57, 1373-1382
