Difference between revisions of "Airlie J. McCoy"
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− | + | ==Introduction to Protein Crystallography== | |
==Publications== | ==Publications== |
Revision as of 11:04, 8 September 2009
Introduction to Protein Crystallography
Publications
- Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard. PDF
- Terwilliger TC, Adams PD, Read RJ, McCoy AJ , Moriarty NW, Grosse-Kunstleve RW, Afonine PV, Zwart PH, Hung LW.
- Acta Crystallogr D Biol Crystallogr. 2009 Jun;65(Pt 6):582-601
- A structural explanation for the binding of endocytic dileucine motifs by the AP2 complex.
- Kelly BT, McCoy AJ, Späte K, Miller SE, Evans PR, Höning S, Owen DJ.
- Nature. 2008 Dec 18;456(7224):976-79
- An introduction to molecular replacement. PDF
- Evans P, McCoy A.
- Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):1-10. Epub 2007 Dec 5.
- Automated structure solution with the PHENIX suite.
- Zwart PH, Afonine PV, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, McKee E, Moriarty NW, Read RJ, Sacchettini JC, Sauter NK, Storoni LC, Terwilliger TC, Adams PD.
- Methods Mol Biol. 2008;426:419-35.
- A SNARE-adaptor interaction is a new mode of cargo recognition in clathrin-coated vesicles
- Miller SE, Collins BM, McCoy AJ, Robinson MS, Owen DJ.
- Nature. 2007 Nov 22;450(7169):570-4.
- High-resolution structure prediction and the crystallographic phase problem
- Qian B, Raman S, Das R, Bradley P, McCoy AJ, Read RJ, Baker D.
- Nature. 2007 Nov 8;450(7167):259-64. Epub 2007 Oct 14.
- Beta-edge interactions in a pentadecameric human antibody V kappa domain.
- James LC, Jones PC, McCoy A, Tennent GA, Pepys MB, Famm K, Winter G.
- J Mol Biol. 2007 Mar 30;367(3):603-8. Epub 2006 Nov 3.
- Phaser crystallographic software PDF
- McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC and Read RJ.
- J. Appl. Cryst. (2007). 40, 658-674.
- Solving structures of protein complexes by molecular replacement with Phaser PDF
- McCoy AJ
- Acta Crystallogr D Biol Crystallogr. 2007 Jan;63(Pt 1):32-41. Epub 2006 Dec 13.
- Crystal structure of rab11 in complex with rab11 family interacting protein 2
- Jagoe WN, Lindsay AJ, Read RJ, McCoy AJ, McCaffrey MW, Khan AR.
- Structure. 2006 Aug;14(8):1273-83.
- Likelihood-enhanced fast translation functions PDF
- McCoy AJ, Grosse-Kunstleve RW, Storoni LC, Read RJ.
- Acta Crystallogr D Biol Crystallogr. 2005 Apr;61(Pt 4):458-64. Epub 2005 Mar 24.
- Liking Likelihood PDF
- McCoy AJ
- Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2169-83. Epub 2004 Nov 26.
- Simple algorithm for a maximum-likelihood SAD function PDF
- McCoy AJ, Storoni LC, Read RJ.
- Acta Crystallogr D Biol Crystallogr. 2004 Jul;60(Pt 7):1220-8. Epub 2004 Jun 22.
- Likelihood-enhanced fast rotation functions PDF
- Storoni LC, McCoy AJ, Read RJ.
- Acta Crystallogr D Biol Crystallogr. 2004 Mar;60(Pt 3):432-8. Epub 2004 Feb 25.
- Recent developments in the PHENIX software for automated crystallographic structure determination
- Adams PD, Gopal K, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Pai RK, Read RJ, Romo TD, Sacchettini JC, Sauter NK, Storoni LC, Terwilliger TC.
- J Synchrotron Radiat. 2004 Jan 1;11(Pt 1):53-5. Epub 2003 Nov 28.
- Application of the complex multivariate normal distribution to crystallographic methods with insights into multiple isomorphous replacement phasing
- Pannu NS, McCoy AJ, Read RJ.
- Acta Crystallogr D Biol Crystallogr. 2003 Oct;59(Pt 10):1801-8. Epub 2003 Sep 19.
- Structure of beta-antithrombin and the effect of glycosylation on antithrombin's heparin affinity and activity
- McCoy AJ, Pei XY, Skinner R, Abrahams JP, Carrell RW.
- J Mol Biol. 2003 Feb 21;326(3):823-33.
- New applications of maximum likelihood and Bayesian statistics in macromolecular crystallography
- McCoy AJ
- Curr Opin Struct Biol. 2002 Oct;12(5):670-3. Review.
- PHENIX: building new software for automated crystallographic structure determination
- Adams PD, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Read RJ, Sacchettini JC, Sauter NK, Terwilliger TC.
- Acta Crystallogr D Biol Crystallogr. 2002 Nov;58(Pt 11):1948-54. Epub 2002 Oct 21.
- Molecular architecture and functional model of the endocytic AP2 complex
- Collins BM, McCoy AJ, Kent HM, Evans PR, Owen DJ.
- Cell. 2002 May 17;109(4):523-35.
- ScFv multimers of the anti-neuraminidase antibody NC10: shortening of the linker in single-chain Fv fragment assembled in V(L) to V(H) orientation drives the formation of dimers, trimers, tetramers and higher molecular mass multimers Full Text Available
- Dolezal O, Pearce LA, Lawrence LJ, McCoy AJ, Hudson PJ, Kortt AA.
- Protein Eng. 2000 Aug;13(8):565-74.
- The conformational activation of antithrombin. A 2.85-A structure of a fluorescein derivative reveals an electrostatic link between the hinge and heparin binding regions.
- Huntington JA*, McCoy A*, Belzar KJ, Pei XY, Gettins PG, Carrell RW.
- *authors contributed equally
- J Biol Chem. 2000 May 19;275(20):15377-83
- Structural basis for dimerization of the Dictyostelium gelation factor (ABP120) rod
- McCoy AJ, Fucini P, Noegel AA, Stewart M.
- Nat Struct Biol. 1999 Sep;6(9):836-41.
- scFv multimers of the anti-neuraminidase antibody NC10: length of the linker between VH and VL domains dictates precisely the transition between diabodies and triabodies
- Atwell JL, Breheney KA, Lawrence LJ, McCoy AJ, Kortt AA, Hudson PJ.
- Protein Eng. 1999 Jul;12(7):597-604.
- Engineered mutants in the switch II loop of Ran define the contribution made by key residues to the interaction with nuclear transport factor 2 (NTF2) and the role of this interaction in nuclear protein import
- Kent HM, Moore MS, Quimby BB, Baker AM, McCoy AJ, Murphy GA, Corbett AH, Stewart M.
- J Mol Biol. 1999 Jun 11;289(3):565-77.
- The structure of the Q69L mutant of GDP-Ran shows a major conformational change in the switch II loop that accounts for its failure to bind nuclear transport factor 2 (NTF2)
- Stewart M, Kent HM, McCoy AJ.
- J Mol Biol. 1998 Dec 18;284(5):1517-27.
- Three-dimensional structures of single-chain Fv-neuraminidase complexes
- Malby RL*, McCoy AJ*, Kortt AA, Hudson PJ, Colman PM.
- *authors contributed equally
- J Mol Biol. 1998 Jun 19;279(4):901-10.
- Structural basis for molecular recognition between nuclear transport factor 2 (NTF2) and the GDP-bound form of the Ras-family GTPase Ran
- Stewart M, Kent HM, McCoy AJ.
- J Mol Biol. 1998 Apr 3;277(3):635-46.
- Structural basis for amoeboid motility in nematode sperm
- Bullock TL, McCoy AJ, Kent HM, Roberts TM, Stewart M.
- Nat Struct Biol. 1998 Mar;5(3):184-9.
- Crystallization and preliminary X-Ray diffraction characterization of a dimerizing fragment of the rod domain of the Dictyostelium gelation factor (ABP-120)
- Fucini P, McCoy AJ, Gomez-Ortiz M, Schleicher M, Noegel AA, Stewart M.
- J Struct Biol. 1997 Nov;120(2):192-5
- Nuclear protein import is decreased by engineered mutants of nuclear transport factor 2 (NTF2) that do not bind GDP-Ran
- Clarkson WD, Corbett AH, Paschal BM, Kent HM, McCoy AJ, Gerace L, Silver PA, Stewart M.
- J Mol Biol. 1997 Oct 10;272(5):716-30.
- The 1.8 A crystal structure of winged bean albumin 1, the major albumin from Psophocarpus tetragonolobus (L.) DC
- McCoy AJ, Kortt AA.
- J Mol Biol. 1997 Jun 27;269(5):881-91.
- Electrostatic complementarity at protein/protein interfaces
- McCoy AJ, Chandana Epa V, Colman PM.
- J Mol Biol. 1997 May 2;268(2):570-84.
- Single-chain Fv fragments of anti-neuraminidase antibody NC10 containing five- and ten-residue linkers form dimers and with zero-residue linker a trimer
- Kortt AA, Lah M, Oddie GW, Gruen CL, Burns JE, Pearce LA, Atwell JL, McCoy AJ, Howlett GJ, Metzger DW, Webster RG, Hudson PJ.
- Protein Eng. 1997 Apr;10(4):423-33.