Difference between revisions of "Downloads"

From Phaserwiki
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Note that the use of Phaser is subject to  [[Licences | '''licence conditions''']]  
 
Note that the use of Phaser is subject to  [[Licences | '''licence conditions''']]  
  
==Phaser-2.5.0 <span style="color:darkorange">''Under Construction''</span>==
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==Phenix==
;Phenix Installation
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;Installation of Phaser with Phenix allows a choice of installation methods
 +
*Precompiled executables for selected platforms
 +
:Linux and MacOS
 +
:Windows (limited functionality of other phenix components e.g. the phenix gui)
 +
*Source installations
 +
*Phubuntu
 +
:Phubuntu is an Ubuntu Linux boot iso file is available from the [http://www.phenix-online.org/download/ Phenix website]
 +
:Burn this file to a DVD and use it to boot your computer and run Phenix and Coot
 +
:This method of installation is very useful for running tutorials/workshops with participants using their own laptops as it circumvents the problems associated participants having heterogeneous operating systems and different Phenix versions installed
 +
:[[Phenix-Ubuntu | More information on Phubuntu]]
 +
===Current Releases===
 +
;Phaser-2.5.0 <span style="color:darkorange">''Under Construction''</span>
 
:Download with Phenix Package → [http://www.phenix-online.org/download/nightly_builds.cgi?admin=1| Nightly Builds]  
 
:Download with Phenix Package → [http://www.phenix-online.org/download/nightly_builds.cgi?admin=1| Nightly Builds]  
:Precompiled executables and source installations are available
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;Phaser-2.4.0
;Phubuntu
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:Download with Phenix Latest Official Release (recommended) 1.7.3-928 (6 Dec 2011) → [http://www.phenix-online.org/download/ Phenix Downloads]
:An Ubuntu Linux boot iso file is available from the [http://www.phenix-online.org/download/ Phenix website]. Burn this file to a DVD and use it to boot your computer and run Phenix and Coot.  
+
 
:This method of installation is very useful for running tutorials/workshops with participants using their own laptops as it circumvents the problems associated participants having heterogeneous operating systems and different Phenix versions installed.
+
==CCP4==
:[[Phenix-Ubuntu | More information on Phubuntu]]
+
===Current Releases===
;CCP4 Installation
+
;Phaser-2.5.0 <span style="color:darkorange">''Under Construction''</span>
 
:Download with Test release of ccp4 v6.3.0. It is tagged as 6.2.993 and the tarballs are available on the ftp server ftp.ccp4.ac.uk/ccp4/6.2.993.  
 
:Download with Test release of ccp4 v6.3.0. It is tagged as 6.2.993 and the tarballs are available on the ftp server ftp.ccp4.ac.uk/ccp4/6.2.993.  
 
:<span style="color:darkorange">''Warning: Known Bugs in this version (4th April 2012)''</span>
 
:<span style="color:darkorange">''Warning: Known Bugs in this version (4th April 2012)''</span>
;CCP4i Windows
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;Phaser-2.3.0
:If you're installing under Windows, the ccp4i files are included in the installation wizard.
 
;CCP4i Linux/MacOS
 
:The ccp4i files for phaser are included in the phaser source code distribution.
 
 
 
==Phaser-2.3.0==
 
;Phenix Installation
 
:Latest official release (recommended): 1.7.3-928 (12-06-2011) → [http://www.phenix-online.org/download/ Phenix Downloads]
 
;CCP4 Installation
 
 
:Download with CCP4 6.2 Package → [http://www.ccp4.ac.uk/download/ CCP4]
 
:Download with CCP4 6.2 Package → [http://www.ccp4.ac.uk/download/ CCP4]
;CCP4i Windows
+
===Updating CCP4i===
:If you're installing under Windows, the ccp4i files are included in the installation wizard
+
;If you're installing under Windows, the ccp4i files are included in the installation wizard.
;CCP4i Linux/MacOS
+
;Linux/MacOS
 
:Download CCP4 interfaces
 
:Download CCP4 interfaces
 
::Molecular Replacement [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_MR_3.tar.gz Phaser_MR_3.tar.gz]
 
::Molecular Replacement [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_MR_3.tar.gz Phaser_MR_3.tar.gz]

Revision as of 15:05, 24 April 2012

Note that the use of Phaser is subject to licence conditions

Phenix

Installation of Phaser with Phenix allows a choice of installation methods
  • Precompiled executables for selected platforms
Linux and MacOS
Windows (limited functionality of other phenix components e.g. the phenix gui)
  • Source installations
  • Phubuntu
Phubuntu is an Ubuntu Linux boot iso file is available from the Phenix website
Burn this file to a DVD and use it to boot your computer and run Phenix and Coot
This method of installation is very useful for running tutorials/workshops with participants using their own laptops as it circumvents the problems associated participants having heterogeneous operating systems and different Phenix versions installed
More information on Phubuntu

Current Releases

Phaser-2.5.0 Under Construction
Download with Phenix Package → Nightly Builds
Phaser-2.4.0
Download with Phenix Latest Official Release (recommended) 1.7.3-928 (6 Dec 2011) → Phenix Downloads

CCP4

Current Releases

Phaser-2.5.0 Under Construction
Download with Test release of ccp4 v6.3.0. It is tagged as 6.2.993 and the tarballs are available on the ftp server ftp.ccp4.ac.uk/ccp4/6.2.993.
Warning: Known Bugs in this version (4th April 2012)
Phaser-2.3.0
Download with CCP4 6.2 Package → CCP4

Updating CCP4i

If you're installing under Windows, the ccp4i files are included in the installation wizard.
Linux/MacOS
Download CCP4 interfaces
Molecular Replacement Phaser_MR_3.tar.gz
Experimental Phasing Phaser_EP_3.tar.gz
Normal Mode Analysis Phaser_NMA_3.tar.gz
To install new Phaser GUI
  1. Make sure you have write permission for the directory where ccp4 is installed
  2. Start the CCP4 GUI (by entering "ccp4i" at the command line)
  3. Select the "System Administration" pull-down on the right-hand side of the CCP4 gui
  4. Select "Install Tasks"
  5. In the new window, in the "Task archive" box, enter <path-to>/Phaser_MR_3.tar.gz. Note that the file must be called Phaser_MR_3.tar.gz − Do not rename it
  6. The details of the Phaser gui installation will appear in the boxes
  7. Click "Apply" at the bottom of the window
  8. Click "Accept" in the prompt box
To uninstall previous Phaser GUI
  1. Make sure you have write permission for the directory where ccp4 is installed
  2. Start the CCP4 GUI (by entering "ccp4i" at the command line)
  3. Select the "System Administration" pull-down on the right-hand side of the CCP4 gui
  4. Select "Install Tasks"
  5. In the top pulldown, Select Run the Installation Manager to "uninstall an existing task"
  6. In the new Choose Task to Uninstall folder, choose "Phaser". If there is no task called Phaser, you have not installed the ccp4i GUI for Phaser manually.
  7. The details of the Phaser gui installation will appear in the boxes
  8. Click "Apply" at the bottom of the window
  9. Click "Proceed" in the prompt box
  10. Exit ccp4i
New GUI will not rerun jobs with old GUI
Keyword input has changed. You cannot (reliably) rerun old phaser jobs in the new GUI (not backwardly compatible).