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| − | <div style="margin-left: 25px; float: right;">__TOC__</div> | + | <div style="margin-left: 25px; float: right;">__NOTOC__</div> |
| − | Current release is '''Phaser-2.3''' → [[Phaser-2.3: Manual | Manual]]
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| | | | |
| − | ==Executables==
| + | Note that the use of Phaser is subject to the University of Cambridge's [[Licences | '''Licences''']] |
| − | *Executables of the nightly builds are available at the [http://www.phenix-online.org Phenix] website. <span style="color:darkorange">''Warning: Under Construction''</span>
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| − | ==Phubuntu== | + | ;Phenix |
| − | *For windows users, an Ubuntu Linux boot iso file is available [http://www.phenix-online.org/download/ here] on the Phenix website (registration required). Burn this file to a DVD and use it to boot your computer under Ubuntu. Phenix and coot are installed and ready to run. [[Phenix-Ubuntu | More information on Phenix-Ubuntu]]
| + | :Phenix [http://www.phenix-online.org/download/nightly_builds.cgi?admin=1| Nightly Builds] |
| | + | :Phenix [http://www.phenix-online.org/download/ Official Releases] (recommended) |
| | + | ;CCP4 |
| | + | :CCP4 [http://www.ccp4.ac.uk/dev/nightly/| Nightly Builds] |
| | + | :CCP4 [http://www.ccp4.ac.uk/download.php Release] (recommended) |
| | + | :'' Official releases will be made available through the CCP4 update mechanism'' |
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| − | ==Source Code== | + | ==Phenix Installation== |
| − | *Installation from source is required to call Phaser from Python
| + | Installation of Phaser with Phenix allows a choice of installation methods |
| − | *To install the current Phaser from source, use the [http://www.phenix-online.org phenix] distribution of Phaser (free to academics). | + | ;Precompiled executables for selected platforms |
| − | *Source installation of Phaser is also available through [http://www.ccp4.ac.uk CCP4] | + | *Linux |
| | + | *Windows |
| | + | *Mac OS |
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| − | ==CCP4i==
| + | ;Source code installation |
| − | If you're installing under Windows, the ccp4i files are included in the installation wizard.
| + | :Phaser can be compiled from source on the above platforms from the Phenix distribution |
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| − | To install the CCP4 GUI compatible with '''Phaser-2.3''' under linux or Mac OSX:
| + | ==CCP4 Installation== |
| − | * Download CCP4 interface for Phaser_MR [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_MR_3.tar.gz Phaser_MR_3.tar.gz]
| + | ;Precompiled executables for selected platforms |
| − | * Download CCP4 interface for Phaser_EP [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_EP_3.tar.gz Phaser_EP_3.tar.gz]
| + | *Linux |
| − | * Download CCP4 interface for Phaser_NMA [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_NMA_3.tar.gz Phaser_NMA_3.tar.gz]
| + | *Windows |
| − | *If you have CCP4-4.2 installed, download [http://www-structmed.cimr.cam.ac.uk/phaser/phaser-ccp4i-4.2-extras.tar.gz phaser-ccp4i-4.2-extras.tar.gz] as well
| + | *Mac OS |
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| − | ===To install the Phaser CCP4 GUI=== | |
| − | The Phaser CCP4 GUI is designed to work with CCP4-5.0 or above, and requires some GUI utilities introduced in the 5.0 distribution. However, if you wish to use Phaser within CCP4-4.2, you can supply these utilities
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| − | by downloading and installing [http://www-structmed.cimr.cam.ac.uk/phaser/phaser-ccp4i-4.2-extras.tar.gz phaser-ccp4i-4.2-extras.tar.gz], following the instructions given in that download.
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| − | | |
| − | The Phaser CCP4 GUI will work immediately with CCP4-5.0 or above, in which case the "extras" file should not be installed.
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| − | | |
| − | To install or uninstall the Phaser gui you must have '''write permission''' for the directory where ccp4 is installed
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| − | | |
| − | ===To install new Phaser GUI===
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| − | # Start the CCP4 GUI (by entering "ccp4i" at the command line)
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| − | # Select the "System Administration" pull-down on the right-hand side of the CCP4 gui
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| − | # Select "Install Tasks"
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| − | # In the new window, in the "Task archive" box, enter <path-to>/Phaser_MR_3.tar.gz. Note that the file '''must''' be called Phaser_MR_3.tar.gz − '''Do not rename it'''
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| − | # The details of the Phaser gui installation will appear in the boxes
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| − | # Click "Apply" at the bottom of the window
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| − | # Click "Accept" in the prompt box
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| − | | |
| − | ===To uninstall previous Phaser GUI===
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| − | # Start the CCP4 GUI (by entering "ccp4i" at the command line)
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| − | # Select the "System Administration" pull-down on the right-hand side of the CCP4 gui
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| − | # Select "Install Tasks"
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| − | # In the top pulldown, Select '''Run the Installation Manager to''' "uninstall an existing task"
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| − | # In the new Choose Task to Uninstall folder, choose "Phaser". ''If there is no task called Phaser, you have not installed the ccp4i GUI for Phaser manually.''
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| − | # The details of the Phaser gui installation will appear in the boxes
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| − | # Click "Apply" at the bottom of the window
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| − | # Click "Proceed" in the prompt box
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| − | # Exit ccp4i
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| − | | |
| − | ===New GUI will not rerun jobs with old GUI===
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| − | Keyword input has changed. You cannot (reliably) rerun old phaser jobs in the new
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| − | GUI (not backwardly compatible).
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