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| | <div style="margin-left: 25px; float: right;">__NOTOC__</div> | | <div style="margin-left: 25px; float: right;">__NOTOC__</div> |
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| − | Phaser is subject to [[Licences | licence]] conditions | + | Note that the use of Phaser is subject to the University of Cambridge's [[Licences | '''Licences''']] |
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| − | Installation from source is required to call Phaser from Python
| + | ;Phenix |
| | + | :Phenix [http://www.phenix-online.org/download/nightly_builds.cgi?admin=1| Nightly Builds] |
| | + | :Phenix [http://www.phenix-online.org/download/ Official Releases] (recommended) |
| | + | ;CCP4 |
| | + | :CCP4 [http://www.ccp4.ac.uk/dev/nightly/| Nightly Builds] |
| | + | :CCP4 [http://www.ccp4.ac.uk/download.php Release] (recommended) |
| | + | :'' Official releases will be made available through the CCP4 update mechanism'' |
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| − | ==Phaser-2.5.0 <span style="color:darkorange">''Under Construction''</span>== | + | ==Phenix Installation== |
| − | ;Phenix Installation
| + | Installation of Phaser with Phenix allows a choice of installation methods |
| − | :Download with Phenix Package → [http://www.phenix-online.org/download/nightly_builds.cgi?admin=1| Nightly Builds]
| + | ;Precompiled executables for selected platforms |
| − | :Precompiled executables and source installations are available
| + | *Linux |
| − | ;Phubuntu
| + | *Windows |
| − | :An Ubuntu Linux boot iso file is available from the [http://www.phenix-online.org/download/ Phenix website]. Burn this file to a DVD and use it to boot your computer and run Phenix and Coot.
| + | *Mac OS |
| − | :[[Phenix-Ubuntu | More information on Phubuntu]]
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| − | ;CCP4 Installation
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| − | :Download with Test release of ccp4 v6.3.0. It is tagged as 6.2.993 and the tarballs are available on the ftp server ftp.ccp4.ac.uk/ccp4/6.2.993.
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| − | :<span style="color:darkorange">''Warning: Known Bugs in this version (4th April 2012)''</span>
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| − | ;CCP4i Windows
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| − | :If you're installing under Windows, the ccp4i files are included in the installation wizard.
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| − | ;CCP4i Linux/MacOS
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| − | :The ccp4i files for phaser are included in the phaser source code distribution.
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| − | ==Phaser-2.3.0==
| + | ;Source code installation |
| − | ;Phenix Installation
| + | :Phaser can be compiled from source on the above platforms from the Phenix distribution |
| − | :Latest official release (recommended): 1.7.3-928 (12-06-2011) → [http://www.phenix-online.org/download/ Phenix Downloads]
| + | |
| − | ;CCP4 Installation | + | ==CCP4 Installation== |
| − | :Download with CCP4 6.2 Package → [http://www.ccp4.ac.uk/download/ CCP4]
| + | ;Precompiled executables for selected platforms |
| − | ;CCP4i Windows
| + | *Linux |
| − | :If you're installing under Windows, the ccp4i files are included in the installation wizard
| + | *Windows |
| − | ;CCP4i Linux/MacOS
| + | *Mac OS |
| − | :Download CCP4 interfaces | |
| − | ::Molecular Replacement [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_MR_3.tar.gz Phaser_MR_3.tar.gz]
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| − | ::Experimental Phasing [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_EP_3.tar.gz Phaser_EP_3.tar.gz]
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| − | ::Normal Mode Analysis [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_NMA_3.tar.gz Phaser_NMA_3.tar.gz]
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| − | :To install new Phaser GUI
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| − | :# Make sure you have '''write permission''' for the directory where ccp4 is installed
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| − | :# Start the CCP4 GUI (by entering "ccp4i" at the command line)
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| − | :# Select the "System Administration" pull-down on the right-hand side of the CCP4 gui
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| − | :# Select "Install Tasks"
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| − | :# In the new window, in the "Task archive" box, enter <path-to>/Phaser_MR_3.tar.gz. Note that the file '''must''' be called Phaser_MR_3.tar.gz − '''Do not rename it'''
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| − | :# The details of the Phaser gui installation will appear in the boxes
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| − | :# Click "Apply" at the bottom of the window
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| − | :# Click "Accept" in the prompt box
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| − | :To uninstall previous Phaser GUI
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| − | :# Make sure you have '''write permission''' for the directory where ccp4 is installed
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| − | :# Start the CCP4 GUI (by entering "ccp4i" at the command line)
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| − | :# Select the "System Administration" pull-down on the right-hand side of the CCP4 gui
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| − | :# Select "Install Tasks"
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| − | :# In the top pulldown, Select '''Run the Installation Manager to''' "uninstall an existing task"
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| − | :# In the new Choose Task to Uninstall folder, choose "Phaser". ''If there is no task called Phaser, you have not installed the ccp4i GUI for Phaser manually.''
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| − | :# The details of the Phaser gui installation will appear in the boxes
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| − | :# Click "Apply" at the bottom of the window
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| − | :# Click "Proceed" in the prompt box
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| − | :# Exit ccp4i
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| − | :New GUI will not rerun jobs with old GUI
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| − | ::Keyword input has changed. You cannot (reliably) rerun old phaser jobs in the new GUI (not backwardly compatible).
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