Difference between revisions of "Downloads"
From Phaserwiki
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Note that the use of Phaser is subject to [[Licences | '''licence conditions''']] | Note that the use of Phaser is subject to [[Licences | '''licence conditions''']] | ||
− | ==Phaser-2.5.0 <span style="color:darkorange">''Under Construction''</span> | + | ==Phenix== |
− | + | ;Installation of Phaser with Phenix allows a choice of installation methods | |
+ | *Precompiled executables for selected platforms | ||
+ | :Linux and MacOS | ||
+ | :Windows (limited functionality of other phenix components e.g. the phenix gui) | ||
+ | *Source installations | ||
+ | *Phubuntu | ||
+ | :Phubuntu is an Ubuntu Linux boot iso file is available from the [http://www.phenix-online.org/download/ Phenix website] | ||
+ | :Burn this file to a DVD and use it to boot your computer and run Phenix and Coot | ||
+ | :This method of installation is very useful for running tutorials/workshops with participants using their own laptops as it circumvents the problems associated participants having heterogeneous operating systems and different Phenix versions installed | ||
+ | :[[Phenix-Ubuntu | More information on Phubuntu]] | ||
+ | ===Current Releases=== | ||
+ | ;Phaser-2.5.0 <span style="color:darkorange">''Under Construction''</span> | ||
:Download with Phenix Package → [http://www.phenix-online.org/download/nightly_builds.cgi?admin=1| Nightly Builds] | :Download with Phenix Package → [http://www.phenix-online.org/download/nightly_builds.cgi?admin=1| Nightly Builds] | ||
− | + | ;Phaser-2.4.0 | |
− | ; | + | :Download with Phenix Latest Official Release (recommended) 1.7.3-928 (6 Dec 2011) → [http://www.phenix-online.org/download/ Phenix Downloads] |
− | : | + | |
− | : | + | ==CCP4== |
− | + | ===Current Releases=== | |
− | + | ;Phaser-2.5.0 <span style="color:darkorange">''Under Construction''</span> | |
:Download with Test release of ccp4 v6.3.0. It is tagged as 6.2.993 and the tarballs are available on the ftp server ftp.ccp4.ac.uk/ccp4/6.2.993. | :Download with Test release of ccp4 v6.3.0. It is tagged as 6.2.993 and the tarballs are available on the ftp server ftp.ccp4.ac.uk/ccp4/6.2.993. | ||
:<span style="color:darkorange">''Warning: Known Bugs in this version (4th April 2012)''</span> | :<span style="color:darkorange">''Warning: Known Bugs in this version (4th April 2012)''</span> | ||
− | ; | + | ;Phaser-2.3.0 |
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:Download with CCP4 6.2 Package → [http://www.ccp4.ac.uk/download/ CCP4] | :Download with CCP4 6.2 Package → [http://www.ccp4.ac.uk/download/ CCP4] | ||
− | + | ===Updating CCP4i=== | |
− | + | ;If you're installing under Windows, the ccp4i files are included in the installation wizard. | |
− | ; | + | ;Linux/MacOS |
:Download CCP4 interfaces | :Download CCP4 interfaces | ||
::Molecular Replacement [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_MR_3.tar.gz Phaser_MR_3.tar.gz] | ::Molecular Replacement [http://www-structmed.cimr.cam.ac.uk/phaser/Phaser_MR_3.tar.gz Phaser_MR_3.tar.gz] |
Revision as of 15:05, 24 April 2012
Note that the use of Phaser is subject to licence conditions
Phenix
- Installation of Phaser with Phenix allows a choice of installation methods
- Precompiled executables for selected platforms
- Linux and MacOS
- Windows (limited functionality of other phenix components e.g. the phenix gui)
- Source installations
- Phubuntu
- Phubuntu is an Ubuntu Linux boot iso file is available from the Phenix website
- Burn this file to a DVD and use it to boot your computer and run Phenix and Coot
- This method of installation is very useful for running tutorials/workshops with participants using their own laptops as it circumvents the problems associated participants having heterogeneous operating systems and different Phenix versions installed
- More information on Phubuntu
Current Releases
- Phaser-2.5.0 Under Construction
- Download with Phenix Package → Nightly Builds
- Phaser-2.4.0
- Download with Phenix Latest Official Release (recommended) 1.7.3-928 (6 Dec 2011) → Phenix Downloads
CCP4
Current Releases
- Phaser-2.5.0 Under Construction
- Download with Test release of ccp4 v6.3.0. It is tagged as 6.2.993 and the tarballs are available on the ftp server ftp.ccp4.ac.uk/ccp4/6.2.993.
- Warning: Known Bugs in this version (4th April 2012)
- Phaser-2.3.0
- Download with CCP4 6.2 Package → CCP4
Updating CCP4i
- If you're installing under Windows, the ccp4i files are included in the installation wizard.
- Linux/MacOS
- Download CCP4 interfaces
- Molecular Replacement Phaser_MR_3.tar.gz
- Experimental Phasing Phaser_EP_3.tar.gz
- Normal Mode Analysis Phaser_NMA_3.tar.gz
- To install new Phaser GUI
- Make sure you have write permission for the directory where ccp4 is installed
- Start the CCP4 GUI (by entering "ccp4i" at the command line)
- Select the "System Administration" pull-down on the right-hand side of the CCP4 gui
- Select "Install Tasks"
- In the new window, in the "Task archive" box, enter <path-to>/Phaser_MR_3.tar.gz. Note that the file must be called Phaser_MR_3.tar.gz − Do not rename it
- The details of the Phaser gui installation will appear in the boxes
- Click "Apply" at the bottom of the window
- Click "Accept" in the prompt box
- To uninstall previous Phaser GUI
- Make sure you have write permission for the directory where ccp4 is installed
- Start the CCP4 GUI (by entering "ccp4i" at the command line)
- Select the "System Administration" pull-down on the right-hand side of the CCP4 gui
- Select "Install Tasks"
- In the top pulldown, Select Run the Installation Manager to "uninstall an existing task"
- In the new Choose Task to Uninstall folder, choose "Phaser". If there is no task called Phaser, you have not installed the ccp4i GUI for Phaser manually.
- The details of the Phaser gui installation will appear in the boxes
- Click "Apply" at the bottom of the window
- Click "Proceed" in the prompt box
- Exit ccp4i
- New GUI will not rerun jobs with old GUI
- Keyword input has changed. You cannot (reliably) rerun old phaser jobs in the new GUI (not backwardly compatible).