Difference between revisions of "Manuals"

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The manuals for Phaser are in two sections
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;Modes
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: The different functions that Phaser can perform (e.g. automated MR, automated SAD). The number of modes increases as major new functionality is added.
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;Keywords
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: Detailed descriptions of the keywords. The keywords change significantly between versions. We attempt to keep backwards compatibility in the use and meaning of keywords between versions but this is not always possible. The ccp4i interface must be compatible with the keywords of the phaser version run. The ccp4-style keyword and phenix-style python input functions are described on the same page (''n.b.'' the manual pages for versions prior to Phaser-2.5 describe these on separate pages).
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The manual pages for versions prior to Phaser-2.5 also have information on XML output, which has been deprecated
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[[Image:Bug.png|link=]] See also: [[Bugs | Bugs]]
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<div style="margin-left: 25px; float: right;">__NOTOC__</div>
 
<div style="margin-left: 25px; float: right;">__NOTOC__</div>
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==Prerelease==
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*'''Phaser-2.8''' → [[Phaser-2.8: Manual | Manual]]
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==Currently Supported Releases==
 
==Currently Supported Releases==
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*'''Phaser-2.7.17''' → [[Phaser-2.7.17: Manual | Manual]]
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==Obsolete==
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*'''Phaser-2.6.0''' → [[Phaser-2.6.0: Manual | Manual]]
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*'''Phaser-2.5.6''' → [[Phaser-2.5.6: Manual | Manual]]
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*'''Phaser-2.5.5''' → [[Phaser-2.5.5: Manual | Manual]]
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*'''Phaser-2.5.4''' → [[Phaser-2.5.4: Manual | Manual]]
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*'''Phaser-2.5.3''' → [[Phaser-2.5.3: Manual | Manual]]
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*'''Phaser-2.5.2''' → [[Phaser-2.5.2: Manual | Manual]]
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<!-- *<span style="color:darkorange">''Under Construction'': </span>'''Phaser-2.5.3''' → [[Phaser: Manual | Manual]] -->
 
*'''Phaser-2.5.1''' → [[Phaser-2.5.1: Manual | Manual]]
 
*'''Phaser-2.5.1''' → [[Phaser-2.5.1: Manual | Manual]]
 
*'''Phaser-2.5''' → [[Phaser-2.5: Manual | Manual]]
 
*'''Phaser-2.5''' → [[Phaser-2.5: Manual | Manual]]
 
==Obsolete==
 
 
*'''Phaser-2.4''' → [[Phaser-2.4: Manual | Manual]]
 
*'''Phaser-2.4''' → [[Phaser-2.4: Manual | Manual]]
 
*'''Phaser-2.3''' → [[Phaser-2.3: Manual | Manual]]
 
*'''Phaser-2.3''' → [[Phaser-2.3: Manual | Manual]]
:Bugfixes
 
#Packing criteria incorrectly set for Phaser MR in CCP4i
 
#:''A fixed interface is available from the ftp site and replaces the distributed interface in automated downloads from 3rd August 2011 onwards.'' →  [http://www.ccp4.ac.uk/problems.php#6.2.0-phaser_MR CCP4-6.2.0 interface bug]
 
# Released 32 bit binary occasionally aborts on 64 bit Linux
 
#: ''A fixed 32 bit binary is available from the ftp site and replaces the distributed binary in automated downloads from  19th October 2011 onwards.'' → [http://www.ccp4.ac.uk/problems.php#6.2.0-phaser CCP4-6.2.0 program bug].
 
 
 
*'''Phaser-2.2''' → [[Phaser-2.2: Manual | Manual]]
 
*'''Phaser-2.2''' → [[Phaser-2.2: Manual | Manual]]
  
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==Ancient==
 
Versions older than Phaser-2.1 are located at the [http://www-structmed.cimr.cam.ac.uk/phaser/ '''obsolete Phaser website''']  
 
Versions older than Phaser-2.1 are located at the [http://www-structmed.cimr.cam.ac.uk/phaser/ '''obsolete Phaser website''']  
 
* '''Phaser-2.1''' → [http://www-structmed.cimr.cam.ac.uk/phaser_obsolete/documentation/phaser-2.1.html Manual]
 
* '''Phaser-2.1''' → [http://www-structmed.cimr.cam.ac.uk/phaser_obsolete/documentation/phaser-2.1.html Manual]

Latest revision as of 15:35, 29 November 2016

The manuals for Phaser are in two sections

Modes
The different functions that Phaser can perform (e.g. automated MR, automated SAD). The number of modes increases as major new functionality is added.
Keywords
Detailed descriptions of the keywords. The keywords change significantly between versions. We attempt to keep backwards compatibility in the use and meaning of keywords between versions but this is not always possible. The ccp4i interface must be compatible with the keywords of the phaser version run. The ccp4-style keyword and phenix-style python input functions are described on the same page (n.b. the manual pages for versions prior to Phaser-2.5 describe these on separate pages).

The manual pages for versions prior to Phaser-2.5 also have information on XML output, which has been deprecated

Bug.png See also: Bugs

Prerelease

Currently Supported Releases

Obsolete

Ancient

Versions older than Phaser-2.1 are located at the obsolete Phaser website