Difference between revisions of "Manuals"

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<div style="margin-left: 25px; float: right;">__TOC__</div>
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The manuals for Phaser are in two sections
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;Modes
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: The different functions that Phaser can perform (e.g. automated MR, automated SAD). The number of modes increases as major new functionality is added.
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;Keywords
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: Detailed descriptions of the keywords. The keywords change significantly between versions. We attempt to keep backwards compatibility in the use and meaning of keywords between versions but this is not always possible. The ccp4i interface must be compatible with the keywords of the phaser version run. The ccp4-style keyword and phenix-style python input functions are described on the same page (''n.b.'' the manual pages for versions prior to Phaser-2.5 describe these on separate pages).
  
The Phaser website at http://www-structmed.cimr.cam.ac.uk/phaser/ is now obsolete.
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The manual pages for versions prior to Phaser-2.5 also have information on XML output, which has been deprecated
  
Current release is '''Phaser-2.2''' → [[Phaser-2.2: Manual | Manual]]
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[[Image:Bug.png|link=]] See also: [[Bugs | Bugs]]
  
==Phaser-2.1==
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<div style="margin-left: 25px; float: right;">__NOTOC__</div>
Release Date: 12th November 2007
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==Prerelease==
* [http://www-structmed.cimr.cam.ac.uk/phaser/documentation/phaser-2.1_key.html Phaser-2.1 keyword input]
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*'''Phaser-2.8''' → [[Phaser-2.8: Manual | Manual]]
* [http://www-structmed.cimr.cam.ac.uk/phaser/documentation/phaser-2.1_py.html Phaser-2.1 python scripting] (for developers)
 
* [http://www-structmed.cimr.cam.ac.uk/phaser/documentation/phaser-2.1_xml.html Phaser-2.1 XML output] (for developers)
 
  
==Phaser-2.0==
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==Currently Supported Releases==
Release Date:
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*'''Phaser-2.7.17''' → [[Phaser-2.7.17: Manual | Manual]]
* [http://www-structmed.cimr.cam.ac.uk/phaser/documentation/phaser-2.0.html Phaser-2.0]
 
  
==Phaser-1.3==
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==Obsolete==
Release Date:
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*'''Phaser-2.6.0''' → [[Phaser-2.6.0: Manual | Manual]]
* [http://www-structmed.cimr.cam.ac.uk/phaser/documentation/phaser-1.3.html Phaser-1.3]
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*'''Phaser-2.5.6''' → [[Phaser-2.5.6: Manual | Manual]]
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*'''Phaser-2.5.5''' → [[Phaser-2.5.5: Manual | Manual]]
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*'''Phaser-2.5.4''' → [[Phaser-2.5.4: Manual | Manual]]
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*'''Phaser-2.5.3''' → [[Phaser-2.5.3: Manual | Manual]]
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*'''Phaser-2.5.2''' → [[Phaser-2.5.2: Manual | Manual]]
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<!-- *<span style="color:darkorange">''Under Construction'': </span>'''Phaser-2.5.3''' → [[Phaser: Manual | Manual]] -->
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*'''Phaser-2.5.1''' → [[Phaser-2.5.1: Manual | Manual]]
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*'''Phaser-2.5''' → [[Phaser-2.5: Manual | Manual]]
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*'''Phaser-2.4''' → [[Phaser-2.4: Manual | Manual]]
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*'''Phaser-2.3''' → [[Phaser-2.3: Manual | Manual]]
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*'''Phaser-2.2''' → [[Phaser-2.2: Manual | Manual]]
  
==Phaser-1.2==
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==Ancient==
Release Date:
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Versions older than Phaser-2.1 are located at the [http://www-structmed.cimr.cam.ac.uk/phaser/ '''obsolete Phaser website''']
* [http://www-structmed.cimr.cam.ac.uk/phaser/documentation/phaser-1.2.html Phaser-1.2]
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* '''Phaser-2.1''' → [http://www-structmed.cimr.cam.ac.uk/phaser_obsolete/documentation/phaser-2.1.html Manual]
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* '''Phaser-2.0''' → [http://www-structmed.cimr.cam.ac.uk/phaser_obsolete/documentation/phaser-2.0.html Manual]
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* '''Phaser-1.3''' → [http://www-structmed.cimr.cam.ac.uk/phaser_obsolete/documentation/phaser-1.3.html Manual]
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* '''Phaser-1.4''' → [http://www-structmed.cimr.cam.ac.uk/phaser_obsolete/documentation/phaser-1.2.html Manual]

Latest revision as of 15:35, 29 November 2016

The manuals for Phaser are in two sections

Modes
The different functions that Phaser can perform (e.g. automated MR, automated SAD). The number of modes increases as major new functionality is added.
Keywords
Detailed descriptions of the keywords. The keywords change significantly between versions. We attempt to keep backwards compatibility in the use and meaning of keywords between versions but this is not always possible. The ccp4i interface must be compatible with the keywords of the phaser version run. The ccp4-style keyword and phenix-style python input functions are described on the same page (n.b. the manual pages for versions prior to Phaser-2.5 describe these on separate pages).

The manual pages for versions prior to Phaser-2.5 also have information on XML output, which has been deprecated

Bug.png See also: Bugs

Prerelease

Currently Supported Releases

Obsolete

Ancient

Versions older than Phaser-2.1 are located at the obsolete Phaser website