Difference between revisions of "Phaser-2.5.1: Manual"

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This is the documentation for Phaser&#8211;2.3. There are some changes between this version and previous versions so input scripts may need editing.
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This is the documentation for Phaser&#8211;2.3 and above. There are some changes between this version and previous versions so input scripts may need editing. '''Not all keywords will be valid for versions before the current (nightly) release of Phaser through Phenix.'''
  
 
==Keywords==
 
==Keywords==

Revision as of 10:15, 19 October 2011

This is the documentation for Phaser–2.3 and above. There are some changes between this version and previous versions so input scripts may need editing. Not all keywords will be valid for versions before the current (nightly) release of Phaser through Phenix.

Keywords

Phaser can be run using CCP4-style keyword input from a pre-compiled executable

Command Line Arguments
When run from the executable, phaser accepts some command line arguements
Keyword Modes
The different functions that Phaser can perform and the keywords relevant for each mode
Keywords
Detailed descriptions of the keywords
Keyword Example Scripts
Copy and edit to start using Phaser from keyword input

Python

Phaser can be scripted using python.

Python Run-Jobs
How to run Phaser from python and the functions relevant for each Run-Job
Python Functions
Detailed descriptions of the functions
Python Example Scripts
Copy and edit to start using Phaser from python

XML

There is XML output available for developers writing automation scripts.
Please contact us for more information or XML output requests.

XML