Difference between revisions of "Phaser-2.5.1: Manual"
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This is the documentation for Phaser–2.5. There are some changes between this version and previous versions so input scripts may need editing. '''Not all keywords will be valid for versions before the current (nightly) release of Phaser through Phenix.''' | This is the documentation for Phaser–2.5. There are some changes between this version and previous versions so input scripts may need editing. '''Not all keywords will be valid for versions before the current (nightly) release of Phaser through Phenix.''' | ||
| − | + | ;[[Keywords | Keywords]] | |
| − | + | : Detailed descriptions of the keywords | |
| + | |||
;[[ Command Line Arguments | Command Line Arguments ]] | ;[[ Command Line Arguments | Command Line Arguments ]] | ||
| + | : Phaser can be run using CCP4-style keyword input from a pre-compiled executable | ||
: When run from the executable, phaser accepts some command line arguements | : When run from the executable, phaser accepts some command line arguements | ||
;[[ Keyword Modes | Keyword Modes ]] | ;[[ Keyword Modes | Keyword Modes ]] | ||
| − | : The different functions that Phaser can perform and the keywords relevant for each mode | + | : The different functions that Phaser can perform and the keywords relevant for each mode |
| − | ;[[ | + | ; [[Python Run-Jobs | Python Run-Jobs]] |
| − | : | + | : How to run Phaser from python and the functions relevant for each Run-Job |
| + | ; [[XML | XML]] | ||
| + | :There is XML output available for developers writing automation scripts. If you require XML output, please contact[mailto:cimr-phaser@lists.cam.ac.uk phaser-help] | ||
| + | ==Examples== | ||
; [[Keyword Example Scripts | Keyword Example Scripts]] | ; [[Keyword Example Scripts | Keyword Example Scripts]] | ||
: Copy and edit to start using Phaser from keyword input | : Copy and edit to start using Phaser from keyword input | ||
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; [[Python Example Scripts | Python Example Scripts ]] | ; [[Python Example Scripts | Python Example Scripts ]] | ||
: Copy and edit to start using Phaser from python | : Copy and edit to start using Phaser from python | ||
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Revision as of 13:11, 4 May 2012
Contents
This is the documentation for Phaser–2.5. There are some changes between this version and previous versions so input scripts may need editing. Not all keywords will be valid for versions before the current (nightly) release of Phaser through Phenix.
- Keywords
- Detailed descriptions of the keywords
- Command Line Arguments
- Phaser can be run using CCP4-style keyword input from a pre-compiled executable
- When run from the executable, phaser accepts some command line arguements
- Keyword Modes
- The different functions that Phaser can perform and the keywords relevant for each mode
- Python Run-Jobs
- How to run Phaser from python and the functions relevant for each Run-Job
- XML
- There is XML output available for developers writing automation scripts. If you require XML output, please contactphaser-help
Examples
- Keyword Example Scripts
- Copy and edit to start using Phaser from keyword input
- Python Example Scripts
- Copy and edit to start using Phaser from python
