Difference between revisions of "Phaser-2.5.1: Manual"
From Phaserwiki
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<div style="margin-left: 25px; float: right;">__NOTOC__</div> | <div style="margin-left: 25px; float: right;">__NOTOC__</div> | ||
− | This is the documentation for Phaser–2.5. There are some changes between this version and previous versions so input scripts may need editing. | + | This is the documentation for Phaser–2.5. There are some changes between this version and previous versions so input scripts may need editing. |
;[[Keywords | Keywords]] | ;[[Keywords | Keywords]] | ||
: Detailed descriptions of the keywords | : Detailed descriptions of the keywords | ||
− | |||
;[[ Command Line Arguments | Command Line Arguments ]] | ;[[ Command Line Arguments | Command Line Arguments ]] | ||
: Phaser can be run using CCP4-style keyword input from a pre-compiled executable | : Phaser can be run using CCP4-style keyword input from a pre-compiled executable | ||
Line 14: | Line 13: | ||
: How to run Phaser from python and the functions relevant for each Run-Job | : How to run Phaser from python and the functions relevant for each Run-Job | ||
; [[XML | XML]] | ; [[XML | XML]] | ||
− | :There is XML output available for developers writing automation scripts. If you require XML output, please contact[mailto:cimr-phaser@lists.cam.ac.uk phaser-help] | + | :There is XML output available for developers writing automation scripts. If you require XML output, please contact [mailto:cimr-phaser@lists.cam.ac.uk phaser-help] |
− | |||
; [[Keyword Example Scripts | Keyword Example Scripts]] | ; [[Keyword Example Scripts | Keyword Example Scripts]] | ||
: Copy and edit to start using Phaser from keyword input | : Copy and edit to start using Phaser from keyword input | ||
; [[Python Example Scripts | Python Example Scripts ]] | ; [[Python Example Scripts | Python Example Scripts ]] | ||
: Copy and edit to start using Phaser from python | : Copy and edit to start using Phaser from python |
Revision as of 13:13, 4 May 2012
This is the documentation for Phaser–2.5. There are some changes between this version and previous versions so input scripts may need editing.
- Keywords
- Detailed descriptions of the keywords
- Command Line Arguments
- Phaser can be run using CCP4-style keyword input from a pre-compiled executable
- When run from the executable, phaser accepts some command line arguements
- Keyword Modes
- The different functions that Phaser can perform and the keywords relevant for each mode
- Python Run-Jobs
- How to run Phaser from python and the functions relevant for each Run-Job
- XML
- There is XML output available for developers writing automation scripts. If you require XML output, please contact phaser-help
- Keyword Example Scripts
- Copy and edit to start using Phaser from keyword input
- Python Example Scripts
- Copy and edit to start using Phaser from python