Difference between revisions of "Phaser-2.5.1: Manual"
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<div style="margin-left: 25px; float: right;">__TOC__</div> | <div style="margin-left: 25px; float: right;">__TOC__</div> | ||
− | This is the documentation for Phaser–2.3. There are some changes between this version and previous versions so input scripts may need editing. | + | This is the documentation for Phaser–2.3 and above. There are some changes between this version and previous versions so input scripts may need editing. '''Not all keywords will be valid for versions before the current (nightly) release of Phaser through Phenix.''' |
==Keywords== | ==Keywords== |
Revision as of 11:15, 19 October 2011
Contents
This is the documentation for Phaser–2.3 and above. There are some changes between this version and previous versions so input scripts may need editing. Not all keywords will be valid for versions before the current (nightly) release of Phaser through Phenix.
Keywords
Phaser can be run using CCP4-style keyword input from a pre-compiled executable
- Command Line Arguments
- When run from the executable, phaser accepts some command line arguements
- Keyword Modes
- The different functions that Phaser can perform and the keywords relevant for each mode
- Keywords
- Detailed descriptions of the keywords
- Keyword Example Scripts
- Copy and edit to start using Phaser from keyword input
Python
Phaser can be scripted using python.
- Python Run-Jobs
- How to run Phaser from python and the functions relevant for each Run-Job
- Python Functions
- Detailed descriptions of the functions
- Python Example Scripts
- Copy and edit to start using Phaser from python
XML
There is XML output available for developers writing automation scripts.
Please contact us for more information or XML output requests.