SCEDS for MR (using keyword input)

Calmodulin

Data for this tutorial are found here

Coordinates: 1.pdb

This tutorial demonstrates SCEDS domain division followed by MR using the domains generated

1. Look at the logfile
   • What are the residues included in each of the SCEDS domains produced?
   • Find the normal modes used for the perturbation that generated the SCEDS domains.
   • Find the number of residues not included in any of the top domains.
2. Look at the pdb files containing the domains with Coot