User contributions
From Phaserwiki
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- 07:38, 19 May 2015 (diff | hist) . . (+359) . . Molecular Replacement (→Has Phaser Solved It?: Clarify interpretation of RFZ.)
- 13:58, 14 May 2015 (diff | hist) . . (+174) . . Keywords (→link=PARTIAL: Clarify necessity to carry out MR before MR-SAD.)
- 15:23, 3 February 2015 (diff | hist) . . (+13) . . Keywords (→link=SOLPARAMETERS: Show MINSIGA in equation.)
- 15:18, 3 February 2015 (diff | hist) . . (-47) . . Keywords (→link=SOLPARAMETERS: Replace "s" by "1/d")
- 15:15, 3 February 2015 (diff | hist) . . (+131) . . Keywords (→link=SOLPARAMETERS: Add equation for solvent term for Sigma(A) curve)
- 19:44, 11 November 2014 (diff | hist) . . (+310) . . Molecular Replacement (→Translational Non-crystallographic Symmetry: Some modifications and clarifications)
- 09:48, 11 August 2014 (diff | hist) . . (+321) . . Keywords (→link=PURGE: Clarify interaction with PEAKS command.)
- 09:44, 11 August 2014 (diff | hist) . . (+258) . . Keywords (→link=PEAKS: Clarify that PURGE is usually the command to use.)
- 13:56, 3 June 2014 (diff | hist) . . (+7) . . Python Example Scripts (→Logfile Handling: Replace setLABI with setLABI_F_SIGF)
- 13:55, 3 June 2014 (diff | hist) . . (+7) . . Python Example Scripts (→Translational NCS Analysis: Replace setLABI with setLABI_F_SIGF)
- 13:55, 3 June 2014 (diff | hist) . . (+7) . . Python Example Scripts (→Cell Content Analysis: Replace setLABI with setLABI_F_SIGF)
- 13:54, 3 June 2014 (diff | hist) . . (+7) . . Python Example Scripts (→Anisotropy Correction: Replace setLABI with setLABI_F_SIGF)
- 13:53, 3 June 2014 (diff | hist) . . (+7) . . Python Example Scripts (→Automated Molecular Replacement: Replace setLABI with setLABI_F_SIGF)
- 13:53, 3 June 2014 (diff | hist) . . (+7) . . Python Example Scripts (→Reading MTZ Files for Molecular Replacement: Replace setLABI with setLABI_F_SIGF)
- 14:06, 29 May 2014 (diff | hist) . . (+53) . . Keywords (→link=BFACTOR: Correct definition of BFACTOR REFINE SIGMA, update default for SIGMA)
- 09:02, 28 May 2014 (diff | hist) . . (+1) . . Keywords (→link=MACTNCS: Correct syntax, with VRMS instead of VAR)
- 12:25, 23 April 2014 (diff | hist) . . (+158) . . Keywords (→link=ENSEMBLE: Provide guess for RMS for EM maps.)
- 18:14, 10 April 2014 (diff | hist) . . (+772) . . SAD using CCP4i (Add step to carry on building from very incomplete initial model)
- 12:18, 9 December 2013 (diff | hist) . . (-214) . . Molecular Replacement (→"rlist" Files: Remove discussion of degenerate translation search, which is no longer supported.)
- 12:17, 9 December 2013 (diff | hist) . . (-447) . . Molecular Replacement (→"sol" Files: Remove discussion of degenerate 3DIM and 5DIM cases, no longer supported.)
- 12:14, 9 December 2013 (diff | hist) . . (-133) . . Molecular Replacement (→How to Define Solutions: Remove mention of degenerate translation functions, which are no longer supported.)
- 12:12, 9 December 2013 (diff | hist) . . (-542) . . Keyword Example Scripts (→Brute Translation Function: Remove script for degenerate translation function, which is no longer supported.)
- 12:11, 9 December 2013 (diff | hist) . . (-309) . . Keyword Example Scripts (→"rlist" Files: Remove discussion of degenerate translation search, which is no longer supported.)
- 12:09, 9 December 2013 (diff | hist) . . (-365) . . Keyword Example Scripts (→"sol" Files: Remove discussion of degenerate 3DIM and 5DIM cases, no longer supported.)
- 10:54, 4 December 2013 (diff | hist) . . (+26) . . FAQ (Mention st9bad_alloc so that people with out of memory problems will find this web page.)
- 11:26, 2 December 2013 (diff | hist) . . (+194) . . FAQ (Add suggestion to cut final refinement resolution to reduce memory usage if necessary.)
- 15:54, 21 October 2013 (diff | hist) . . (-2) . . m Publications (→Primary Citations: Format LERF citation like the rest (authors after title))
- 15:52, 21 October 2013 (diff | hist) . . (+634) . . Publications (→Primary Citations: Add CCP4 Study Weekend 2013 papers)
- 07:40, 8 October 2013 (diff | hist) . . (+170) . . Molecular Replacement (→What to do in Difficult Cases: Note that brute rotation function can now be used within automated pipeline)
- 07:36, 8 October 2013 (diff | hist) . . (+443) . . FAQ (Update discussion of negative LLG to mention VRMS refinement.)
- 08:11, 22 August 2013 (diff | hist) . . (+4) . . Keywords (→link=SOLPARAMETERS: Add "USE" subkey to default definition for BULK)
- 10:40, 5 August 2013 (diff | hist) . . (+126) . . Keywords (→link=RFACTOR: Note that this test also applies to judging success in MR_ATOM)
- 10:38, 5 August 2013 (diff | hist) . . (+19) . . Keywords (→link=SOLUTION: Mention Euler angle convention here.)
- 10:37, 5 August 2013 (diff | hist) . . (+218) . . Molecular Replacement (→Annotation: Add explanation of Euler angle convention.)
- 09:21, 4 August 2013 (diff | hist) . . (-2) . . Keywords (→link=RFACTOR: Change RESHARP to RFACTOR to RFACTOR description)
- 12:59, 28 June 2013 (diff | hist) . . (0) . . Keywords (→link=TRANSLATE: Footnotes didn't correspond to superscripts)
- 12:55, 28 June 2013 (diff | hist) . . (+2) . . m Keywords (→link=TRANSLATE: add spaces)
- 12:54, 28 June 2013 (diff | hist) . . (+7) . . Keywords (→link=ROTATE: Need VOLUME subkey in ROTATE AROUND option)
- 13:36, 25 June 2013 (diff | hist) . . (-135) . . FAQ (Update advice on memory consumption)
- 21:51, 11 April 2013 (diff | hist) . . (+7) . . m SAD using CCP4i (formatting)
- 21:25, 11 April 2013 (diff | hist) . . (+84) . . SAD using CCP4i (A few more changes to match the current SAD pipeline.)
- 16:03, 10 April 2013 (diff | hist) . . (+726) . . SAD using CCP4i (Update to describe Phaser pipeline instead of old standalone Phaser-EP GUI)
- 16:58, 19 January 2013 (diff | hist) . . (+62) . . Publications (→Primary Citations: Add link to tNCS statistics PDF)
- 16:57, 19 January 2013 (diff | hist) . . (+149) . . Publications (→Primary Citations: Add tNCS statistics paper (add link once file is uploaded))
- 19:15, 23 November 2012 (diff | hist) . . (-2) . . MR using CCP4i:BETA/BLIP (Update for current version of Phaser) (current)
- 19:10, 23 November 2012 (diff | hist) . . (+794) . . Combined MR-SAD using CCP4i (Bring up to date with CCP4 6.3, using Parrot instead of DM and ARP/wARP Classic instead of Expert System)
- 09:48, 8 November 2012 (diff | hist) . . (+399) . . Molecular Replacement (→Has Phaser Solved It?: Add a paragraph about finding a single PDB file.)
- 09:43, 8 November 2012 (diff | hist) . . (+546) . . Molecular Replacement (→Has Phaser Solved It?: Update, clarify.)
- 11:03, 10 October 2012 (diff | hist) . . (-1) . . m Keywords (→link=MACTNCS: Correct subkey "VRMS" to "VAR")
- 10:30, 28 August 2012 (diff | hist) . . (+24) . . m Molecular Replacement (→What Resolution of Data Should be Used?: minor clarification)
- 12:09, 27 August 2012 (diff | hist) . . (0) . . m Keywords (→link=ELLG: Fix typo in link)
- 12:07, 27 August 2012 (diff | hist) . . (+69) . . Keywords (→link=ELLG: Link eLLG to explanation)
- 11:59, 27 August 2012 (diff | hist) . . (+2,402) . . Molecular Replacement (Concept of eLLG and strategies based on it)
- 16:13, 15 August 2012 (diff | hist) . . (+478) . . Bugs (Add description of SGALTERNATIVE LIST bug in CCP4-6.3 version) (current)
- 10:39, 18 May 2012 (diff | hist) . . (+13) . . Keywords (→link=PACK: Clarify description of PACK_CUTOFF)
- 19:21, 17 May 2012 (diff | hist) . . (+9) . . Keywords (→link=PACK: add "PERCENT" to setPACK_SELE choices)
- 10:38, 24 April 2012 (diff | hist) . . (-736) . . Top Ten Tips (Update tips, add some for SAD and both)
- 09:30, 24 April 2012 (diff | hist) . . (+79) . . Publications (→Reviews: add link)
- 09:24, 24 April 2012 (diff | hist) . . (+104) . . Publications (→Reviews: add paper)
- 09:19, 24 April 2012 (diff | hist) . . (+271) . . Events (→2010: add some meetings)
- 09:15, 24 April 2012 (diff | hist) . . (+301) . . Events (→2011: add a few workshops)
- 09:09, 24 April 2012 (diff | hist) . . (-1) . . m Events (→2012)
- 09:07, 24 April 2012 (diff | hist) . . (-11) . . m Events (→2012)
- 09:06, 24 April 2012 (diff | hist) . . (-3) . . m Events (→Upcoming)
- 09:05, 24 April 2012 (diff | hist) . . (+105) . . Events (→2012: add Santa Fe)
- 09:03, 24 April 2012 (diff | hist) . . (+57) . . Events (→Upcoming: add ECM27)
- 11:23, 17 February 2012 (diff | hist) . . (-1) . . Keywords (→link=TNCS: Correct defaults, particularly TNCS USE defaults to ON)
- 10:02, 27 January 2012 (diff | hist) . . (+35) . . Keywords (→link=ENSEMBLE: A bit clearer yet)
- 10:01, 27 January 2012 (diff | hist) . . (+59) . . Keywords (→link=ENSEMBLE: Clarify meaning of "extent")
- 18:21, 18 October 2011 (diff | hist) . . (+1) . . m Keywords (→link=BFACTOR: fix another typo)
- 18:20, 18 October 2011 (diff | hist) . . (-1) . . m Keywords (→link=BFACTOR: fix typo)
- 18:53, 29 September 2011 (diff | hist) . . (+30) . . Keywords (→link=ENSEMBLE: Update information about how CARD option is implemented in non-standard PDB files.)
- 09:47, 28 September 2011 (diff | hist) . . (+461) . . Molecular Replacement (→Has Phaser Solved It?: Update to describe TFZ-equivalent)
- 13:26, 3 August 2011 (diff | hist) . . (+11) . . Downloads (→CCP4i: also Mac)
- 13:25, 3 August 2011 (diff | hist) . . (0) . . Downloads (→Source Code: change 2.1 to 2.3)
- 13:55, 31 May 2011 (diff | hist) . . (+4) . . Publications (→Primary Citations)
- 13:53, 31 May 2011 (diff | hist) . . (+178) . . Publications (→Primary Citations)
- 12:46, 31 May 2011 (diff | hist) . . (+13) . . Downloads (→Phubuntu: Point to Phubuntu download on Phenix website, which is more likely to be up-to-date.)
- 09:42, 16 May 2011 (diff | hist) . . (-1) . . m Keywords (→link=NMAPDB: Update stretch default)
- 09:39, 16 May 2011 (diff | hist) . . (+22) . . Keywords (→link=NMAMETHOD: Update defaults)
- 08:53, 29 April 2011 (diff | hist) . . (+120) . . Keywords (→link=COMPOSITION: Correct default and clarify)
- 19:51, 12 April 2011 (diff | hist) . . (+202) . . m Experimental Phasing (→Combined MR and SAD Phasing: Clarify that MR model contributes to phases.)
- 10:00, 9 December 2010 (diff | hist) . . (+21) . . Experimental Phasing (→Combined MR and SAD Phasing: Update script)
- 08:58, 9 December 2010 (diff | hist) . . (+20) . . Experimental Phasing (→SAD Phasing: Add (now required) wavelength keyword)
- 08:57, 9 December 2010 (diff | hist) . . (+22) . . Modes (Add WAVELENGTH to required keywords for EP_AUTO and EP_SAD)
- 08:52, 9 December 2010 (diff | hist) . . (-25) . . Experimental Phasing (→SAD Phasing: Correct script for current version of Phaser)
- 08:48, 9 December 2010 (diff | hist) . . (+11) . . m Keywords (→link=MODE: correct link to description of modes)
- 08:43, 16 November 2010 (diff | hist) . . (+250) . . Keywords (→link=RESOLUTION: Correct description of defaults)
- 08:55, 5 November 2010 (diff | hist) . . (+143) . . Keywords (→link=SOLUTION: add description of SOLU TEMPLATE command)
- 08:00, 9 July 2010 (diff | hist) . . (0) . . m Keywords (→link=SCATTERING: Fix description of SCATTERING SIGMA command)
- 14:48, 8 July 2010 (diff | hist) . . (-1) . . m Keywords (→link=SCATTERING: Correct SIGMA value)
- 15:48, 2 July 2010 (diff | hist) . . (+53) . . Keyword Example Scripts (→Normal Mode Analysis: Update script for syntax changes)
- 15:38, 2 July 2010 (diff | hist) . . (-5) . . m Keyword Example Scripts (→Normal Mode Analysis)
- 15:37, 2 July 2010 (diff | hist) . . (+534) . . Keyword Example Scripts (→Normal Mode Analysis: Correct EIGEN command in example, clarify that these are unusual options to choose.)
- 08:21, 26 May 2010 (diff | hist) . . (-474) . . m Keywords (→link=ENSEMBLE: Update documentation for ENSEMBLE HKLIN option)
- 09:53, 24 May 2010 (diff | hist) . . (+70) . . m Keywords (Add SGALT defaults)
- 11:37, 5 February 2010 (diff | hist) . . (+1) . . m Keywords (→link=HAND: Update default)
- 12:23, 19 October 2009 (diff | hist) . . (0) . . m Keywords (→link=MACNCS: finish drms->vrms)
- 12:22, 19 October 2009 (diff | hist) . . (0) . . m Keywords (→link=MACNCS: drms -> vrms)
- 10:55, 13 October 2009 (diff | hist) . . (+182) . . Keywords (→link=TNCS: Update for modified syntax.)
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